PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

RAV

Protein Properties

Length: 344aa MW: 37999.8 Da PI: 10.2467

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.L01094.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	43.4	8.7e-14	52	100	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++kGV + +grW A+I++ ++r++lg+f +eeAa+a++ a+++++g Migut.L01094.1.p 52 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAARAYDTAAQRFRG 100 689*9788.8*****3.....5***********************98 PP
2	B3	101.7	4.2e-32	181	280	1	96
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+ tpsdv+k++rlv+pk++ae+h +g++ +++ l led+ ++W+++++y+++s++yvltkGW++Fvk+++L++gD+v F+++ + Migut.L01094.1.p 181 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqSGSTSKGILLNLEDRGAKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFHRSTGPD 273 89**************************888899*************************************************876677 PP E..EEEE CS B3 90 felvvkv 96 ++l++ + Migut.L01094.1.p 274 KQLYIDW 280 7777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	3.86E-25	52	107	No hit	No description
Pfam	PF00847	7.1E-9	52	100	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.42E-17	52	108	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	8.8E-21	53	108	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	20.178	53	108	IPR001471	AP2/ERF domain
SMART	SM00380	4.2E-30	53	114	IPR001471	AP2/ERF domain
Gene3D	G3DSA:2.40.330.10	1.5E-40	175	286	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.44E-29	179	282	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.13E-28	180	269	No hit	No description
Pfam	PF02362	1.4E-28	181	281	IPR003340	B3 DNA binding domain
SMART	SM01019	7.3E-26	181	284	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	14.099	181	284	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MNGTNSTDYS ISITPPPSNP PDKLCRVGSG ASVITDGENN VIEAESRKLP SSRFKGVVPQ 60 PNGRWGAQIY EKHQRVWLGT FNEEEEAARA YDTAAQRFRG RDAVTNFKPL SDQKHDDEVE 120 AAFLNSHSKA EIVDMLRKHT YADELEQSRR NFGKNGGGAA RGGGAFGFCG GAAEKAREQL 180 FEKAVTPSDV GKLNRLVIPK QHAEKHFPLQ SGSTSKGILL NLEDRGAKVW RFRYSYWNSS 240 QSYVLTKGWS RFVKEKNLRA GDVVSFHRST GPDKQLYIDW KPRNNVNAPL PAAAIAVVPG 300 QMVRLFGVNI FESPRNSGGG KRMVEMELLG LHTSKKQRVV NAL*

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MNGTNSTDYS ISITPPPSNP PDKLCRVGSG ASVITDGENN VIEAESRKLP SSRFKGVVPQ  60
PNGRWGAQIY EKHQRVWLGT FNEEEEAARA YDTAAQRFRG RDAVTNFKPL SDQKHDDEVE  120
AAFLNSHSKA EIVDMLRKHT YADELEQSRR NFGKNGGGAA RGGGAFGFCG GAAEKAREQL  180
FEKAVTPSDV GKLNRLVIPK QHAEKHFPLQ SGSTSKGILL NLEDRGAKVW RFRYSYWNSS  240
QSYVLTKGWS RFVKEKNLRA GDVVSFHRST GPDKQLYIDW KPRNNVNAPL PAAAIAVVPG  300
QMVRLFGVNI FESPRNSGGG KRMVEMELLG LHTSKKQRVV NAL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wid_A	2e-56	178	284	11	118	DNA-binding protein RAV1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269\|PubMed:18718758}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.L01094.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269\|PubMed:18718758}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012833164.1	0.0	PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1-like
Swissprot	Q9C6M5	1e-142	RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1
TrEMBL	A0A2G9I1N7	0.0	A0A2G9I1N7_9LAMI; Uncharacterized protein
STRING	Migut.L01094.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2958	24	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25560.1	1e-135	RAV family protein

Link Out ? help Back to Top
Phytozome	Migut.L01094.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Choi D, et al. iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis. Mol Plant, 2014. 7(5): p. 792-813 [PMID:24380880] Sgamma T,Jackson A,Muleo R,Thomas B,Massiah A TEMPRANILLO is a regulator of juvenility in plants. Sci Rep, 2014. 4: p. 3704 [PMID:24424565] Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S RAV genes: regulation of floral induction and beyond. Ann. Bot., 2014. 114(7): p. 1459-70 [PMID:24812253] Marín-González E, et al. SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures. Plant Physiol., 2015. 169(2): p. 1214-24 [PMID:26243615] Matías-Hernández L, et al. TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation. Plant Physiol., 2016. 170(3): p. 1624-39 [PMID:26802039]