PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.L01008.1.p
Common NameLOC105954230, MIMGU_mgv1a026739mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family C3H
Protein Properties Length: 334aa    MW: 37460.9 Da    PI: 6.5088
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.L01008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH48.11.9e-15249273226
                       -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                       ktelC+ +++tG C+yGd+C+FaHg
  Migut.L01008.1.p 249 KTELCNKWQQTGACPYGDNCQFAHG 273
                       9***********************8 PP
2zf-CCCH17.47.7e-06286311126
                       --S---SGGGGTS.--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartG.tCkyGdrCkFaHg 26 
                       ykte Cr  +  G  C+yG rC+F H+
  Migut.L01008.1.p 286 YKTEVCRMVLN-GvPCPYGHRCHFRHS 311
                       99*****9999.67**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.109.4E-19242280IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-11244279IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-8247274IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.136247275IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-12249273IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-8281315IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-12281314IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-4285312IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.469285313IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MQREISISGH EWPDFSSTPA PAPFTGDYDF AALFHPSIFP PEHSPLLDYS NDGSFSSPSM  60
ESEDALGSYF PQIQQQQRLH QDLMGRHQKV LFHLSEAAKQ AQSLRQENVN LKMANFELKN  120
RLNLLLNGRQ FHGVDLGPSF DSVEDGLRKM SMGVEEEGTS ENEAVAKSPT SVMDSGLGGQ  180
GELERVNLPK SISVRSSGYL KAIRAARKGD DCVKASNQNK TDNETQKVYV KGGKEQPLEL  240
EVYNQGMIKT ELCNKWQQTG ACPYGDNCQF AHGIQELRPV VRHPRYKTEV CRMVLNGVPC  300
PYGHRCHFRH SLTEEEQLTR EINSNSLNPM NYR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A3e-21249314570Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.L01008.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012833359.10.0PREDICTED: zinc finger CCCH domain-containing protein 15-like
SwissprotQ9C9F51e-64C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A022RLC20.0A0A022RLC2_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA91402228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.14e-61C3H family protein