PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.L00879.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | MYB | ||||||||
Protein Properties | Length: 253aa MW: 27942.6 Da PI: 10.49 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.6 | 1e-16 | 15 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W+ +Ed+llv++v ++G+++W+tI ++m gR + +c+ rw ++l Migut.L00879.2.p 15 KGHWSCDEDKLLVELVIRHGPRNWSTIGKKMK-GRRGSSCRARWMNHL 61 789****************************9.*************97 PP | |||||||
2 | Myb_DNA-binding | 24.3 | 7.1e-08 | 68 | 109 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++++eE e+++++ k +G++ W++ + + gRt+ q+k+ ++ Migut.L00879.2.p 68 TPFSEEEKERILQLYKDHGSK-WSSFVEFFR-GRTDCQLKNLYH 109 68*******************.*********.****99999776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.605 | 10 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.67E-26 | 13 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.8E-13 | 14 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.3E-15 | 15 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-22 | 16 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.60E-12 | 18 | 61 | No hit | No description |
PROSITE profile | PS51294 | 8.473 | 66 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 0.024 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.9E-6 | 67 | 109 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-15 | 69 | 111 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.28E-4 | 69 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MEAFLSLKRK PESRKGHWSC DEDKLLVELV IRHGPRNWST IGKKMKGRRG SSCRARWMNH 60 LNPQVVKTPF SEEEKERILQ LYKDHGSKWS SFVEFFRGRT DCQLKNLYHS LAATRKKAKE 120 PQIPYWAAPP NMGGSMDFSG GSGGLTNVSQ FADVAWWGNK TDLPLFNGGA GGSSSIYAGG 180 STLFGAHRPN PGGFYPFENT NIGNGYYANL GKNNGDPMMS RARSAAPQAK EGGAKNEKLS 240 IHRLFGGRKI SE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 5e-25 | 11 | 110 | 6 | 153 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 5e-25 | 11 | 110 | 6 | 153 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.L00879.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012828884.1 | 0.0 | PREDICTED: myb-related protein 3R-1-like | ||||
TrEMBL | A0A022QCR7 | 1e-170 | A0A022QCR7_ERYGU; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33450.1 | 2e-31 | myb domain protein 69 |
Link Out ? help Back to Top | |
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Phytozome | Migut.L00879.2.p |