PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.L00854.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB_related
Protein Properties Length: 283aa    MW: 32201.7 Da    PI: 5.7494
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.L00854.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.71.5e-14130174347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +WT+eE++l++ + +++G+g+W++I+r+   ++t+ q+ s+ qky
  Migut.L00854.1.p 130 PWTEEEHQLFLMGLNKYGKGDWRSISRYYVITKTPTQVASHAQKY 174
                       8*****************************889***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007176.5E-42476IPR001005SANT/Myb domain
SuperFamilySSF466891.0E-62780IPR009057Homeodomain-like
PROSITE profilePS500904.3792874IPR017877Myb-like domain
CDDcd001670.004562874No hitNo description
Gene3DG3DSA:1.10.10.602.1E-11122181IPR009057Homeodomain-like
PROSITE profilePS5129420.026123179IPR017930Myb domain
SuperFamilySSF466891.15E-16124179IPR009057Homeodomain-like
TIGRFAMsTIGR015578.2E-17127178IPR006447Myb domain, plants
SMARTSM007179.0E-13127177IPR001005SANT/Myb domain
PfamPF002493.1E-13130174IPR001005SANT/Myb domain
CDDcd001678.19E-11130175No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MEWPADFQYS PLEESPLHGI EIDKGAGWTF EENKMFENAL AEIDPSSPAF FENVGSRVPW  60
KTIEDIKNHY QALIEDVGLI ESGKFPIPDY EQNNVYHHLE GKKYDQIESI NKDEGSPSTK  120
NGQQRRRGVP WTEEEHQLFL MGLNKYGKGD WRSISRYYVI TKTPTQVASH AQKYFRRQTS  180
STPVDRRRPS IHDIQTVNPT TFTTLPLSNT LTNVVDEPIP FSSCGVIPML HHNLNGGTNF  240
ELNSIFLPLN STFPSTDDIF NQSSGSHHAP YFISPTRNQQ WG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-122590873RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.L00854.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098014.11e-134transcription factor SRM1-like
SwissprotQ8S9H71e-52DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A022RKM80.0A0A022RKM8_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52342032
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.19e-52MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]