PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

HD-ZIP

Protein Properties

Length: 260aa MW: 28489.1 Da PI: 7.7545

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.L00436.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55	1.4e-17	113	167	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk q Lee F +++++ +++ eLA+ l+L rqV vWFqNrRa+ k Migut.L00436.1.p 113 RKKLRLTKAQSALLEESFLLHSTLNPKQKHELAQDLKLRPRQVEVWFQNRRARTK 167 677899***********************************************98 PP
2	HD-ZIP_I/II	119.6	1.7e-38	113	201	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl+k q++lLEesF +++L+p++K+ela++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL+ + Migut.L00436.1.p 113 RKKLRLTKAQSALLEESFLLHSTLNPKQKHELAQDLKLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELHELK-S 201 69*************************************************************************************9.4 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.67E-17	104	170	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.342	109	169	IPR001356	Homeobox domain
SMART	SM00389	3.0E-14	111	173	IPR001356	Homeobox domain
Pfam	PF00046	4.4E-15	113	167	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.0E-16	113	172	IPR009057	Homeodomain-like
CDD	cd00086	6.65E-16	113	170	No hit	No description
PROSITE pattern	PS00027	0	144	167	IPR017970	Homeobox, conserved site
SMART	SM00340	8.3E-22	169	212	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	5.6E-10	169	203	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MGFEDLRHTC LVLGLGLPSS PPTYSTGEDK SRNPAAAAPG RGSINLDRSC NISDQPTLTL 60 SLAGDTTFDD DDNKLHGHDS GGAASSFSNG SVKREREIEE DDENNNGSVN GIRKKLRLTK 120 AQSALLEESF LLHSTLNPKQ KHELAQDLKL RPRQVEVWFQ NRRARTKLKQ TEVDCEFLKK 180 CCETLTDENR RLQKELHELK SLKSPPPPLY MQFPAATLTV CPSCEKIGGG GVSDKTANKN 240 IVPFAVATKP HFYNPSAAC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	161	169	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.L00436.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM665418	1e-45	KM665418.1 Ananas bracteatus clone 50555b microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012832563.1	0.0	PREDICTED: homeobox-leucine zipper protein HAT22-like
Swissprot	P46604	3e-73	HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBL	A0A022RN11	0.0	A0A022RN11_ERYGU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA290	24	186

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	2e-61	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Migut.L00436.1.p
Entrez Gene	105953448

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]