![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Migut.L00302.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 369aa MW: 41738.4 Da PI: 9.5109 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.5 | 2.3e-16 | 4 | 53 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 r+rW +eEd ll +vkq+G++ W++I+++mg + R +k+c +rw +yl Migut.L00302.1.p 4 RQRWQPEEDALLRAYVKQYGPKEWSLISQRMGktLDRDPKSCLERWKNYL 53 89**********************************************97 PP | |||||||
2 | Myb_DNA-binding | 33.1 | 1.3e-10 | 59 | 103 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+ T++E+ l + + +++G++ Wk+Ia++++ gRt+k + +w + Migut.L00302.1.p 59 KGSLTADEQHLVISLQAKYGNK-WKKIAAEVP-GRTAKRLGKWWEVF 103 5778******************.*********.*****999999766 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.024 | 1 | 57 | IPR017930 | Myb domain |
SMART | SM00717 | 3.5E-14 | 3 | 55 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.56E-22 | 4 | 98 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.26E-10 | 6 | 53 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.0E-21 | 6 | 60 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 2.8E-14 | 7 | 68 | No hit | No description |
SMART | SM00717 | 6.1E-8 | 58 | 106 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 17.195 | 58 | 108 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-14 | 61 | 108 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.56E-5 | 63 | 104 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 369 aa Download sequence Send to blast |
MKDRQRWQPE EDALLRAYVK QYGPKEWSLI SQRMGKTLDR DPKSCLERWK NYLKPGIKKG 60 SLTADEQHLV ISLQAKYGNK WKKIAAEVPG RTAKRLGKWW EVFKEKQLKH LQRSSSHHHL 120 DYGITPPGSS AAGGGAAASP EGKYDHILET FAEKYVQPNL FSSFQSPTSP GIIMPAAAAV 180 SNLTLPDPPP NSGAALPPWL NMNSTPTTTS SLTSSSSSTT PSPSVSLTLS PSEAAAVVVD 240 PIQPLANRFN FPIQQVGILI QHCKELEEGR ENLMRHKKEA TWRLSRVEQQ LEAEKARRKR 300 EKTEEVEERI RRLREEEAAY VSRMEAEYRE EMKGLRRDAE AKEDKLMEEW CSNHVKLEKL 360 LQQIENFG* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 9e-15 | 7 | 92 | 7 | 89 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 1e-14 | 7 | 92 | 7 | 89 | C-Myb DNA-Binding Domain |
1msf_C | 1e-14 | 7 | 92 | 7 | 89 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 296 | 301 | RRKREK |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Migut.L00302.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012847889.1 | 0.0 | PREDICTED: protein rough sheath 2 homolog, partial | ||||
TrEMBL | A0A0K1SBK8 | 1e-171 | A0A0K1SBK8_REHGL; R2R3-MYB protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2933 | 24 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G37630.1 | 9e-83 | MYB family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Migut.L00302.1.p |