PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.L00217.1.p
Common NameLOC105966634, MIMGU_mgv1a010596mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB_related
Protein Properties Length: 308aa    MW: 33408.9 Da    PI: 6.2758
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.L00217.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.17.3e-12556147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                      ++rWT eE+  l+ +v+++G g W+ I +          R+  ++k++w+++
  Migut.L00217.1.p  5 KQRWTSEEESALKAGVQKHGVGKWSVILKDPEfnpvlRLRSNVDLKDKWRNL 56
                      79***********************************99***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.012163IPR017930Myb domain
SuperFamilySSF466894.04E-15258IPR009057Homeodomain-like
SMARTSM007171.4E-6459IPR001005SANT/Myb domain
PfamPF002493.9E-8556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-13556IPR009057Homeodomain-like
CDDcd116606.69E-20657No hitNo description
SMARTSM005266.6E-9127192IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150419.451129197IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467852.07E-12129199IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.109.2E-12130198IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005381.4E-7131190IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MGAPKQRWTS EEESALKAGV QKHGVGKWSV ILKDPEFNPV LRLRSNVDLK DKWRNLNCMV  60
NGLGSRNRGN SANKNTQSAP KIEEGTAIEN VVVERESVAL DAATPLAAIN ETIQDETIQD  120
AKDGSSIHQI PRLDDLILEA ITKLKEPRGS NRKSIASYIE DHHSAFPDLE RDLAANLKLL  180
TGNGQLVKVK RQYRIAPSPR SIASVVLKVK EPPLTQFEVK KDLSEWERNG IVPLTKAQID  240
AELEKMKSMS AKEAVAAAAK ALAEAEAAIA LAEAAALEAE EAEAEAEAAH CFANAAQKTL  300
NCNFVHA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.L00217.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012846682.10.0PREDICTED: telomere repeat-binding factor 1-like
TrEMBLA0A022QPW20.0A0A022QPW2_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51222235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.31e-62telomere repeat binding factor 1