PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

LBD

Protein Properties

Length: 163aa MW: 17496.4 Da PI: 6.7499

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.K01393.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	134.8	3.3e-42	17	116	1	99
DUF260 1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +CaaCk+lrrkC++ C++apyfp e+p kf nvh++FGasnv+kll+++ +++reda++sl+yeAear++dPvyG+vg i+ lq+q++ql++ Migut.K01393.1.p 17 PCAACKFLRRKCQPTlCIFAPYFPPEDPTKFSNVHRIFGASNVSKLLNDIMPHQREDAVNSLAYEAEARLKDPVYGCVGAISLLQSQVAQLQK 109 7**********999************************************************************************* PP DUF260 93 elallke 99 el+++++ Migut.K01393.1.p 110 ELDATNA 116 99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.746	16	118	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.1E-41	17	115	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016021	Cellular Component	integral component of membrane

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MASSSSSSSS SSYSNPPCAA CKFLRRKCQP TLCIFAPYFP PEDPTKFSNV HRIFGASNVS 60 KLLNDIMPHQ REDAVNSLAY EAEARLKDPV YGCVGAISLL QSQVAQLQKE LDATNADLMR 120 FTTINNNNNH GRVAGYGGGS DPNYSGFSLP YSNPGGEDAN YS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-57	17	121	11	114	LOB family transfactor Ramosa2.1
5ly0_B	1e-57	17	121	11	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.K01393.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012840538.1	1e-117	PREDICTED: LOB domain-containing protein 25-like
Swissprot	Q8L8Q3	5e-63	LBD25_ARATH; LOB domain-containing protein 25
TrEMBL	A0A022R787	1e-105	A0A022R787_ERYGU; Uncharacterized protein
STRING	Migut.K01393.1.p	1e-117	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	7e-63	LOB domain-containing protein 25

Link Out ? help Back to Top
Phytozome	Migut.K01393.1.p

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]