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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.K01176.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | NF-YB | ||||||||
Protein Properties | Length: 259aa MW: 28493.8 Da PI: 7.634 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 128.9 | 1.8e-40 | 64 | 155 | 2 | 93 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 r+ ++++ ian++rim++vlPanaki+++ake ++ec+sefi f+t+ea+ +c+r+ r+t++++d+l a+atlGf+dy+epl+++l+k+r Migut.K01176.1.p 64 RDANQYMSIANITRIMRRVLPANAKIANNAKEAIEECISEFIRFITAEANARCHRDYRNTVTPEDVLAAMATLGFDDYLEPLTIFLNKHRAQ 155 7899*************************************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.8E-39 | 57 | 166 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 9.35E-31 | 69 | 168 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.5E-18 | 72 | 133 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 2.6E-13 | 97 | 115 | No hit | No description |
PRINTS | PR00615 | 2.6E-13 | 116 | 134 | No hit | No description |
PRINTS | PR00615 | 2.6E-13 | 135 | 153 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MERGRSSNIE HKHTRRARTS GIVIREEGAP AAATTATTNA VYNLAPLNAG DGEVNQQQQQ 60 AFKRDANQYM SIANITRIMR RVLPANAKIA NNAKEAIEEC ISEFIRFITA EANARCHRDY 120 RNTVTPEDVL AAMATLGFDD YLEPLTIFLN KHRAQQNPER GSMNQLPQFV RRDRTIDGGS 180 SGFVHHQQQQ GAQMVQSPPP PTATPTVGYY VPLPPPPSAT VEEEEKLGGL TKFINDYMLR 240 NHGGGGQGSS RGCDFDPF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 1e-37 | 64 | 153 | 7 | 96 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.K01176.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012846005.1 | 2e-98 | PREDICTED: nuclear transcription factor Y subunit B-8-like | ||||
TrEMBL | A0A022QDF8 | 1e-176 | A0A022QDF8_ERYGU; Uncharacterized protein (Fragment) | ||||
STRING | Migut.K01176.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6044 | 4 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21970.1 | 7e-32 | NF-YB family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.K01176.1.p |