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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.K01166.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | NF-YB | ||||||||
Protein Properties | Length: 236aa MW: 26263.3 Da PI: 5.1804 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 85 | 8.6e-27 | 75 | 144 | 24 | 93 |
NF-YB 24 nakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 a i+ dake +qec+sefi +t+ea+ +c+re rkt+ ++d+l a+a+lG+edy+epl+++l+k+r Migut.K01166.1.p 75 LAEITYDAKEAIQECISEFIRVITAEANVRCHREYRKTVMPEDVLAAMASLGLEDYLEPLTTFLNKHRAQ 144 5889***************************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 6.8E-28 | 76 | 157 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.3E-12 | 76 | 122 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 8.91E-23 | 78 | 164 | IPR009072 | Histone-fold |
PRINTS | PR00615 | 1.2E-11 | 86 | 104 | No hit | No description |
PRINTS | PR00615 | 1.2E-11 | 105 | 123 | No hit | No description |
PRINTS | PR00615 | 1.2E-11 | 124 | 142 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MERGRSSDIE YKYTRRARTS GIVIREQGAP VVATAAATNA AYIPAPPNAA VGEMNREQQR 60 GFKREPISPA SYDALAEITY DAKEAIQECI SEFIRVITAE ANVRCHREYR KTVMPEDVLA 120 AMASLGLEDY LEPLTTFLNK HRAQQDPERN SMNQVQQFVR RGNTGGGDNS NGFVYPQQQQ 180 GDQIVQSPPP TATASTLGYY VHLPPPPFAT VEDEEERGEL TKVKDDYMLR NLNHT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 1e-22 | 74 | 142 | 28 | 96 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.K01166.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012841020.1 | 5e-67 | PREDICTED: nuclear transcription factor Y subunit beta-like | ||||
TrEMBL | A0A022QAG3 | 1e-126 | A0A022QAG3_ERYGU; Uncharacterized protein (Fragment) | ||||
STRING | Migut.K01166.1.p | 1e-175 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6044 | 4 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.2 | 6e-24 | nuclear factor Y, subunit B6 |
Link Out ? help Back to Top | |
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Phytozome | Migut.K01166.1.p |