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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.K01092.1.p | ||||||||
Common Name | LOC105953393, MIMGU_mgv1a002409mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 679aa MW: 76451.2 Da PI: 6.6405 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.7 | 1.1e-19 | 22 | 77 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+eq+++Le++++++++p++++r++L+++lgL+++q+k+WFqN+R++ k Migut.K01092.1.p 22 KKQYHRHTTEQIQQLEAFYNECPHPDKNQRQQLSRELGLDQKQIKFWFQNKRTQIK 77 688999**********************************************9877 PP | |||||||
2 | START | 138.6 | 6.6e-44 | 195 | 415 | 3 | 206 |
HHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS START 3 aeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 a +a++el+ + ++ep+W++ + + +d + +f++s+ + e +++sg v m ++ l e+l+d++ +W+e+++ ka+t Migut.K01092.1.p 195 AVAAMNELLELLRVNEPLWFEAPsdhgrYTLRRDSYDMIFPKSNQvntssARFESSKDSGEVAMSATHLIETLVDVN-KWKENFPtivtKATT 286 7899*******************77776666677777777776669999999*************************.*************** PP EEEECTT...EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS START 82 levissg...galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170 le+i++g g l+lm+++ lsplv+ R+f f+Ry+rq + +wv+vdvS + ++ + +s R+ ++pSg++i++ sng+s+vtw+ehv Migut.K01092.1.p 287 LEAIDTGifgGLLHLMYQKIHILSPLVApREFFFIRYSRQINSSTWVLVDVSYNFITQLQ-DSVPTRSWRFPSGCIIQDISNGKSTVTWIEHV 378 ***************************99***********************99999988.88899*************************** PP E--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 171 dlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206 ++++l h l+r +v ++a gak+w tlqr ce+ Migut.K01092.1.p 379 QVDDKLStHRLYRDFVCGSQAYGAKRWITTLQRMCER 415 *******9***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-20 | 9 | 81 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.5E-18 | 12 | 80 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.876 | 19 | 79 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.5E-18 | 21 | 83 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.00E-17 | 22 | 80 | No hit | No description |
Pfam | PF00046 | 3.2E-17 | 22 | 77 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 54 | 77 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 42.025 | 184 | 418 | IPR002913 | START domain |
SuperFamily | SSF55961 | 5.63E-28 | 186 | 416 | No hit | No description |
CDD | cd08875 | 3.32E-90 | 188 | 414 | No hit | No description |
SMART | SM00234 | 9.1E-28 | 193 | 415 | IPR002913 | START domain |
Pfam | PF01852 | 1.8E-36 | 195 | 415 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.6E-8 | 251 | 385 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 1.18E-8 | 475 | 670 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 679 aa Download sequence Send to blast |
MDLSNRGNGS GDEENCNSRE GKKQYHRHTT EQIQQLEAFY NECPHPDKNQ RQQLSRELGL 60 DQKQIKFWFQ NKRTQIKAQN ERADSNSLRS ENERIHFENL SMHEALKNAF CPSCNSSGVC 120 EEEKRENLQR LRIENARLKE EHERAVNFLT NYMGNLILPS VGTEPSASAP GQQYMSQHWS 180 TSVTHVDKSV IIETAVAAMN ELLELLRVNE PLWFEAPSDH GRYTLRRDSY DMIFPKSNQV 240 NTSSARFESS KDSGEVAMSA THLIETLVDV NKWKENFPTI VTKATTLEAI DTGIFGGLLH 300 LMYQKIHILS PLVAPREFFF IRYSRQINSS TWVLVDVSYN FITQLQDSVP TRSWRFPSGC 360 IIQDISNGKS TVTWIEHVQV DDKLSTHRLY RDFVCGSQAY GAKRWITTLQ RMCERFAFSN 420 GLIATPTNEL EGVIESLEGK RNVMNLSQRM VESFFEVLCM SDKLDFPNPS EYQYSGVCVA 480 LRKSDGPHQP DGFIVSAATS LWLPFSKEHL FNFFQDEKRR AQWDVLSNGS PVIPVAHIST 540 GTRPGNRISI IQPFVPKENK MLVLQESSID SLGAAIIYAP MDLKALLSVV NGDDTMKIPI 600 LPSGFVISTD GRASSRGTNG ASTSSNTGSG GSLLTVAFQI LICHSQLTSQ LNMESVATVH 660 TLISSSIKKI KEALDYYD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.K01092.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012832506.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG11-like isoform X1 | ||||
TrEMBL | A0A022RNN2 | 0.0 | A0A022RNN2_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1021 | 17 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 0.0 | homeodomain GLABROUS 11 |
Link Out ? help Back to Top | |
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Phytozome | Migut.K01092.1.p |
Entrez Gene | 105953393 |