PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

HD-ZIP

Protein Properties

Length: 326aa MW: 37811.1 Da PI: 7.3595

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.K01088.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.2	1.8e-20	22	77	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+eq+++Le++++++++p++++r++L+++lgL+++q+k+WFqN+R+++k Migut.K01088.1.p 22 KKQYHRHTTEQIQQLEAFYNECPHPDKNQRQQLSRELGLDQKQIKFWFQNKRTQMK 77 688999***********************************************998 PP
2	START	32.6	1.8e-11	195	307	3	89
HHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS START 3 aeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 a +a++el+ + ++ep+W++ + + +d + +f++s+ + e +++sg v m ++ l e l+d++ +W+e ++ ka+t Migut.K01088.1.p 195 AVAAMNELLELLRVNEPLWFEAPsdhgrYTLRRDSYDMIFPKSNQvntssARFESSKDSGEVAMSATHLIEMLVDVN-KWKEIFPtivtKATT 286 7899*****************77776666677777777776669999999*********************.*********** PP EEEECTT.............E CS START 82 levissg.............g 89 le+i++g + Migut.K01088.1.p 287 LEAIDTGifggllhlgrtskN 307 *****99755444444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.7E-20	8	80	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.84E-19	12	79	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.665	19	79	IPR001356	Homeobox domain
SMART	SM00389	4.8E-18	21	83	IPR001356	Homeobox domain
CDD	cd00086	3.24E-16	22	77	No hit	No description
Pfam	PF00046	4.9E-18	22	77	IPR001356	Homeobox domain
PRINTS	PR00031	7.5E-5	50	59	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	54	77	IPR017970	Homeobox, conserved site
PRINTS	PR00031	7.5E-5	59	75	IPR000047	Helix-turn-helix motif
PROSITE profile	PS50848	16.15	184	293	IPR002913	START domain
SuperFamily	SSF55961	1.68E-6	186	318	No hit	No description
Pfam	PF01852	1.9E-6	195	307	IPR002913	START domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MDLSNRRNGS GDEENYNSRE GKKQYHRHTT EQIQQLEAFY NECPHPDKNQ RQQLSRELGL 60 DQKQIKFWFQ NKRTQMKALN ERADNNSLRS ENQRIHFENL SMHEVLKNAF CPSCNNSGVC 120 EEEKRQNLQR LRIENARRKE EYERAVNFFT NYTGNPALPF AGTEPSTSAP GQQYMSQHWS 180 TSLTHVDKSV IIETAVAAMN ELLELLRVNE PLWFEAPSDH GRYTLRRDSY DMIFPKSNQV 240 NTSSARFESS KDSGEVAMSA THLIEMLVDV NKWKEIFPTI VTKATTLEAI DTGIFGGLLH 300 LGRTSKNSYY YYYHYIFGIS ERIKN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.K01088.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012832510.1	0.0	PREDICTED: homeobox-leucine zipper protein ROC8-like
TrEMBL	A0A022RNN7	0.0	A0A022RNN7_ERYGU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1021	17	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G73360.1	1e-72	homeodomain GLABROUS 11

Link Out ? help Back to Top
Phytozome	Migut.K01088.1.p