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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.K01079.1.p | ||||||||
Common Name | LOC105956273, MIMGU_mgv1a022472mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 679aa MW: 76428.2 Da PI: 6.7195 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.9 | 1.9e-19 | 22 | 77 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+eq+++Le++++++++p++++r++L+++lgL+++q+k+WFqN+R++ k Migut.K01079.1.p 22 KKQYHRHTTEQIQQLEAFYNECPHPDKNQRQQLSRELGLDQNQIKFWFQNKRTQTK 77 688999**********************************************9987 PP | |||||||
2 | START | 136.5 | 2.7e-43 | 195 | 415 | 3 | 206 |
HHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS START 3 aeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 a +a++el+ + ++ep+W++ + + +d + +f++s+ + e +++sg v m ++ l e l+d++ +W+e ++ ka+t Migut.K01079.1.p 195 AVAAMNELMELLRVNEPLWFEAPsehgrYTLRRDSYDMIFPKSNQvntssARFESSKDSGEVAMSATHLIEMLVDVN-KWKEIFPtivtKATT 286 7899*******************65555555555555566665559999999*************************.*************** PP EEEECTT...EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS START 82 levissg...galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170 le+i++g g l+lm++++ lsplv+ R+f f+Ry+rq + +wv+vdvS d ++ + +s R+ ++pSg++i++ sng+s+vtw+ehv Migut.K01079.1.p 287 LEAIDTGifgGLLHLMYQKMHILSPLVApREFFFIRYSRQINSSTWVLVDVSYDFITQLQ-DSVPTRSWRFPSGCIIQDISNGKSTVTWIEHV 378 ***************************99**************************99998.8999**************************** PP E--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 171 dlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206 ++++l h l+r +v ++a gak+w lqr ce+ Migut.K01079.1.p 379 QVDDKLStHRLYRDFVCGSQAYGAKRWITSLQRMCER 415 *******9***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.5E-20 | 9 | 80 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.05E-18 | 11 | 78 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.422 | 19 | 79 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.1E-17 | 21 | 83 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 5.4E-17 | 22 | 77 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.19E-16 | 22 | 77 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 54 | 77 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 42.295 | 184 | 418 | IPR002913 | START domain |
SuperFamily | SSF55961 | 5.91E-28 | 188 | 416 | No hit | No description |
CDD | cd08875 | 1.60E-90 | 188 | 414 | No hit | No description |
SMART | SM00234 | 2.0E-27 | 193 | 415 | IPR002913 | START domain |
Pfam | PF01852 | 4.5E-36 | 195 | 415 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.8E-8 | 251 | 385 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 7.55E-11 | 472 | 671 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 679 aa Download sequence Send to blast |
MDLSNRGNGS GDEENYNSRN GKKQYHRHTT EQIQQLEAFY NECPHPDKNQ RQQLSRELGL 60 DQNQIKFWFQ NKRTQTKALN ERADNNSLRS ENERIHFENL SMHEALKNAF CPSCNSSGVC 120 EEEKRQNLQR LRIENAHLKE EHERAVNFLT NYMGNPILPS VGTEPSTSAP GEQYMSQHWS 180 TSVTHVDQSV IIETAVAAMN ELMELLRVNE PLWFEAPSEH GRYTLRRDSY DMIFPKSNQV 240 NTSSARFESS KDSGEVAMSA THLIEMLVDV NKWKEIFPTI VTKATTLEAI DTGIFGGLLH 300 LMYQKMHILS PLVAPREFFF IRYSRQINSS TWVLVDVSYD FITQLQDSVP TRSWRFPSGC 360 IIQDISNGKS TVTWIEHVQV DDKLSTHRLY RDFVCGSQAY GAKRWITSLQ RMCERFAFSN 420 GLIATPTNEL EGVIESLEGK RNVMTLSQRM VESFFEVLCM SDKLDFPNPL EYHNSGVCVA 480 LRKSNGPHQP DGFIVSAATS LWLPFSKEHL FNFFHDEKRR AQWDALSNGN PVTTVAHIST 540 GTHPGNRISI IQPFLPKENK MVVLQESSID SLGAAIIYAP MDLKALLSVV NGEDATKIPI 600 LPSGFVISTD GRASSRGTNG ASTSSNTGSG GSLLTVAFQI LICHSQLTTQ LNMESVATVH 660 TLISSTVKKI KAALHYYD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.K01079.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012832516.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG11-like isoform X1 | ||||
TrEMBL | A0A022RJ86 | 0.0 | A0A022RJ86_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1021 | 17 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 0.0 | homeodomain GLABROUS 11 |
Link Out ? help Back to Top | |
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Phytozome | Migut.K01079.1.p |
Entrez Gene | 105956273 |