PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.K01050.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | bHLH | ||||||||
Protein Properties | Length: 1220aa MW: 139145 Da PI: 8.3886 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.2 | 0.00035 | 1077 | 1136 | 31 | 54 |
.......................................TTS-STCHHHHHHHHHHHHHH CS HLH 31 s....................................kapskKlsKaeiLekAveYIksL 54 + ++++k+ + a++L A+eYIk L Migut.K01050.1.p 1077 PfrsktqkqengvvncgrdegkdqqqqrsgsrerggsGGGGKRTDTASVLSDAIEYIKFL 1136 0555555566666666666666666666666777774556666***************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd14798 | 3.39E-7 | 3 | 145 | No hit | No description |
SuperFamily | SSF52540 | 7.48E-65 | 167 | 426 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
Pfam | PF00931 | 9.8E-79 | 183 | 454 | IPR002182 | NB-ARC |
Gene3D | G3DSA:3.40.50.300 | 3.8E-14 | 185 | 339 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
PRINTS | PR00364 | 1.7E-17 | 197 | 212 | No hit | No description |
PRINTS | PR00364 | 1.7E-17 | 270 | 284 | No hit | No description |
PRINTS | PR00364 | 1.7E-17 | 362 | 376 | No hit | No description |
SuperFamily | SSF52058 | 5.21E-22 | 492 | 507 | IPR032675 | Leucine-rich repeat domain, L domain-like |
SuperFamily | SSF52058 | 5.21E-22 | 538 | 872 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene3D | G3DSA:3.80.10.10 | 8.6E-10 | 601 | 669 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene3D | G3DSA:3.80.10.10 | 8.6E-10 | 730 | 878 | IPR032675 | Leucine-rich repeat domain, L domain-like |
PRINTS | PR00364 | 1.7E-17 | 786 | 802 | No hit | No description |
SuperFamily | SSF52058 | 5.21E-22 | 967 | 993 | IPR032675 | Leucine-rich repeat domain, L domain-like |
SuperFamily | SSF47459 | 2.14E-6 | 1020 | 1039 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.4E-6 | 1023 | 1038 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.4E-6 | 1116 | 1141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.14E-6 | 1117 | 1150 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006952 | Biological Process | defense response | ||||
GO:0043531 | Molecular Function | ADP binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 1220 aa Download sequence Send to blast |
MAAYAALVSV LTIIDQIQNH PRFSISFDKN QIESLGEKVG FLLDFIETDT HGVIIEHARV 60 LERRIASAAY AAEDVIESHV VDQIQAAGSV EGHRLRKVVK DIMLSMRLKK ARMEENHASS 120 ISMLDLEKVI EDMDSIKKKV MEFRDESGSN EHDMQPTSTT SSSTPRITTD KNTMVGFDEQ 180 LISLLDKLTG QRSNRQIIPI VGMGGIGKTT LAKNAYEHSL IAHHFDIRTW VTISQKYNVK 240 ELLLQLLSMI SSEIDSEHDE QLLGQKLHKI LWGRRYLIVI DDIWGIEAWD NVNLFFPENN 300 NGSRIVVTTR ISNVATHFDS SLFELSFLDE NKSWDLFCKK TFGEAGCPLE LEDIGKEIVK 360 KCKGLPLSIT VIGGLLGRSH MTQKYWKNIA KDLTSFLNSG EDENCSNILS LSYTYLPAHL 420 KPCFLYMAIF PEDHKILVSR LTKLWVAEGF IKSNESQSSE EIARGYINDL IDRNLILKHT 480 MGSNGNVKNC VIHDLVRDLC LMVAQKEEFI CVIEDIPRGT ERGRRIVCDK KIRQVRYPFS 540 VFHTVRLAPR TSTWVTSRDG RTFRALRPLR LAPLTRTWVT SIDGRLSNNR LLRVMSSNSE 600 AKKTDLRRHI VDHVNMRYLA CTNFKLSSAF VLPSSINIVW SLQTIIIRGK IEAPSQIWEM 660 RQLRHVDIYR LCLPNSPWSY GHKQDECVLP NLQTLKKVVN FTWSKEAYKR VVNVRKLNIV 720 YDDEWEWSNN NDYCLHNICQ LHKLESLSCL SYCGDERLRK LTFPSSLKKL KLDGFMLGYE 780 DLTVIGSLPC LEVLKLRNNS IIAREWNPVD GEFLRLKSLL IYGSGLVNWN ADTSNFPVLE 840 KLVLEYMDKL DGIPLDIGEI PTLRHIELNV CNESAIISAM KIAEEQEDAG NDILQVRVEF 900 RFEYELQLFQ EKMKQSADHS FTRNNFQVVA RNMVFRRRRR RFVRRHRPSC QRHFPPHSSS 960 NCRPLPVFDH IRLGLLRNCR CPPLSSNSIS VMVLILNNLF NLIYFIRVIH DDNYEHVDPV 1020 RKEKMGDRIT ALQQLVSPFG KPQISHLLLQ IITIAGAIVI TGIGLFTDAL SLLSSPPFRS 1080 KTQKQENGVV NCGRDEGKDQ QQQRSGSRER GGSGGGGKRT DTASVLSDAI EYIKFLHEQI 1140 SFVRPQQFAY ETLSHLPVKI LYTPSKVFPL GILRVSSSVF YNTVPHSCTP LDCTGYLICS 1200 YYEACGCTST VVAVYFVTM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6s2p_N | 6e-76 | 170 | 507 | 6 | 347 | NRC1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 935 | 943 | RRRRRRFVR |
2 | 1109 | 1117 | RGGSGGGGK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.K01050.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012848186.1 | 0.0 | PREDICTED: putative late blight resistance protein homolog R1B-17 | ||||
Refseq | XP_012848187.1 | 0.0 | PREDICTED: putative late blight resistance protein homolog R1B-17 | ||||
Refseq | XP_012848188.1 | 0.0 | PREDICTED: putative late blight resistance protein homolog R1B-17 | ||||
TrEMBL | A0A022QKM7 | 0.0 | A0A022QKM7_ERYGU; Uncharacterized protein | ||||
STRING | Migut.K01050.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G05170.1 | 5e-07 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.K01050.1.p |