PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.K00968.1.p
Common NameLOC105962393, MIMGU_mgv1a014465mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MIKC_MADS
Protein Properties Length: 189aa    MW: 21358.7 Da    PI: 8.4456
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.K00968.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.26.7e-26959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krie++s r v fskRrng++KKA+ELSvLCd++va iifs++gkly y+s
  Migut.K00968.1.p  9 KRIEDNSARMVCFSKRRNGLIKKAKELSVLCDVDVAAIIFSKRGKLYQYCS 59
                      79***********************************************96 PP

2K-box35.34.9e-131121654396
             K-box  43 LesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                       +e+Ls+ +L  +++qLe++l +iR +K++++++  + lq+kek+l+ee+k+ ++
  Migut.K00968.1.p 112 VEKLSVADLGLMQKQLETALMEIRLTKTKMMTDAQSSLQEKEKMLEEEKKNFNE 165
                       689*********************************************998765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.693161IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-33160IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.28E-28275IPR002100Transcription factor, MADS-box
CDDcd002651.29E-32271No hitNo description
PRINTSPR004048.3E-25323IPR002100Transcription factor, MADS-box
PfamPF003192.3E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-253859IPR002100Transcription factor, MADS-box
PROSITE profilePS512977.56964173IPR002487Transcription factor, K-box
PfamPF014866.0E-8112165IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MGRKKLEIKR IEDNSARMVC FSKRRNGLIK KAKELSVLCD VDVAAIIFSK RGKLYQYCSA  60
DSISQVLQEY KSRIESENDG CDTEDLYSKN GDYLTYGELL KTVGSELKEP RVEKLSVADL  120
GLMQKQLETA LMEIRLTKTK MMTDAQSSLQ EKEKMLEEEK KNFNEIVEGN KCAKKKKVVI  180
DLNIAADG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-18186185MEF2 CHIMERA
6byy_B2e-18186185MEF2 CHIMERA
6byy_C2e-18186185MEF2 CHIMERA
6byy_D2e-18186185MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.K00968.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP1722420.0KP172242.1 Erythranthe guttata MADS affecting flowering 465 (MAF465) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012842151.11e-133PREDICTED: agamous-like MADS-box protein AGL27
TrEMBLA0A022QXX61e-131A0A022QXX6_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65050.24e-37AGAMOUS-like 31