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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Migut.K00965.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family |
MIKC_MADS |
Protein Properties |
Length: 189aa MW: 21387.5 Da PI: 8.1988 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Migut.K00965.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 75.8 | 3.3e-24 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
k+ien+s + v fskRrng++KKA ELSvLC+++va i fs++gklyey+s
Migut.K00965.1.p 9 KQIENNSAQMVCFSKRRNGLIKKARELSVLCNVDVAAIFFSKRGKLYEYCS 59
78***********************************************96 PP
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2 | K-box | 33.3 | 2.1e-12 | 112 | 164 | 43 | 95 |
K-box 43 LesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95
++++s+ +L L++++e++l +Rs+K++++++ + lq+ke++l+ee+k +
Migut.K00965.1.p 112 VDKISVADLGLLQKHVETALMDVRSTKTKIMTDAQSSLQEKENMLEEEKKHFN 164
56899*******************************************98765 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009910 | Biological Process | negative regulation of flower development |
GO:0010048 | Biological Process | vernalization response |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 189 aa
Download sequence Send
to blast |
MGRRKLEMKQ IENNSAQMVC FSKRRNGLIK KARELSVLCN VDVAAIFFSK RGKLYEYCSA 60 NSMAHVLQQY QSRVESEKDG CDTEDLYSRN GDYLTYSELL KTVGSELKEP HVDKISVADL 120 GLLQKHVETA LMDVRSTKTK IMTDAQSSLQ EKENMLEEEK KHFNEIVEGN KCAKKKKVVI 180 DLNITADG*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KP172242 | 1e-169 | KP172242.1 Erythranthe guttata MADS affecting flowering 465 (MAF465) mRNA, partial cds. |