PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.K00961.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MIKC_MADS
Protein Properties Length: 183aa    MW: 20552.4 Da    PI: 8.4685
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.K00961.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF72.43.8e-23959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krie++  r v fskRrng++KKA+ELSvLCd++ a iifs++gkl+ y+s
  Migut.K00961.1.p  9 KRIEENGARMVCFSKRRNGLIKKAKELSVLCDVDLAAIIFSNRGKLFQYCS 59
                      79***********************************************96 PP

2K-box29.62.8e-111001554196
             K-box  41 edLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                        +L++Ls+ +L  Le+q+  +l + Rs K++ +l+ ++ l++ +k+l ee+++L++
  Migut.K00961.1.p 100 SELDELSVTDLVLLEKQIGVALIQTRSAKTQRMLNTVSSLREEKKNLAEEKRSLEE 155
                       68**************************************************9975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006627.446161IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-31160IPR002100Transcription factor, MADS-box
CDDcd002654.07E-31272No hitNo description
SuperFamilySSF554556.54E-26272IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-23323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-232338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-233859IPR002100Transcription factor, MADS-box
PROSITE profilePS512977.71464163IPR002487Transcription factor, K-box
PfamPF014866.5E-7101155IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MGRKKLEIKR IEENGARMVC FSKRRNGLIK KAKELSVLCD VDLAAIIFSN RGKLFQYCST  60
DSILQRYQAE SSTGSREEKG QSSDDSGFIT SEEILQKVES ELDELSVTDL VLLEKQIGVA  120
LIQTRSAKTQ RMLNTVSSLR EEKKNLAEEK RSLEEITGSN RNASKKKMIV DLNNVADDRM  180
TE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-18175182MEF2C
5f28_B3e-18175182MEF2C
5f28_C3e-18175182MEF2C
5f28_D3e-18175182MEF2C
6bz1_A3e-18171173MEF2 CHIMERA
6bz1_B3e-18171173MEF2 CHIMERA
6bz1_C3e-18171173MEF2 CHIMERA
6bz1_D3e-18171173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable MADS-box transcription factor that functions with J2 and EJ2 in meristem maturation. {ECO:0000269|PubMed:28528644}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.K00961.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP1722433e-88KP172243.1 Erythranthe guttata MADS affecting flowering 601 (MAF601) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012842149.11e-127PREDICTED: MADS-box protein CMB1-like
RefseqXP_012842150.11e-127PREDICTED: MADS-box protein CMB1-like
SwissprotK4BND82e-32MADS4_SOLLC; MADS-box protein 04g005320
TrEMBLA0A022R3T58e-93A0A022R3T5_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.15e-33MIKC_MADS family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Soyk S, et al.
    Bypassing Negative Epistasis on Yield in Tomato Imposed by a Domestication Gene.
    Cell, 2017. 169(6): p. 1142-1155.e12
    [PMID:28528644]