PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

Dof

Protein Properties

Length: 243aa MW: 24891.7 Da PI: 9.0439

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.K00833.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.8	5e-38	23	82	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++l+cprCdst+tkfCyynny+ sqPr+fCk+CrryWt+GG+lr++P+Ggg+rk+ k+s Migut.K00833.1.p 23 PEHLPCPRCDSTHTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPIGGGTRKSAKRS 82 57899**************************************************98875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-28	19	80	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.1E-32	25	80	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.845	26	80	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	28	64	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MATDTSERKL AKAGHVGAPA PEPEHLPCPR CDSTHTKFCY YNNYNFSQPR HFCKSCRRYW 60 THGGTLRDIP IGGGTRKSAK RSRTTIVSSA TSGSSAATSF SSAAAHQYRD FGHFPAAASQ 120 LLVPFAAAAD HGGYMPFSSD VAKMGGSFTS LLNSNHGGGG GILALGGFGL GLDDVGFGLG 180 RAAAAWPFPG VVEGRPGGGN GGGSSGGGHT WQMENGQGGF MGGGDCFAFP DLAISTPGRV 240 LK*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.K00833.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin and salicylic acid (SA). {ECO:0000269\|PubMed:10758484}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP662922	5e-72	KP662922.1 Cajanus cajan Dof38 (Dof38) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012835034.1	1e-176	PREDICTED: dof zinc finger protein DOF3.4-like isoform X1
Swissprot	Q39088	2e-50	DOF34_ARATH; Dof zinc finger protein DOF3.4
TrEMBL	A0A022RHY3	1e-175	A0A022RHY3_ERYGU; Uncharacterized protein
STRING	Migut.K00833.1.p	1e-176	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4532	22	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66940.1	4e-41	Dof family protein

Link Out ? help Back to Top
Phytozome	Migut.K00833.1.p
Entrez Gene	105955786

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]