PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.K00168.1.p
Common NameLOC105976733, MIMGU_mgv1a008825mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family C2H2
Protein Properties Length: 362aa    MW: 41854.2 Da    PI: 8.0765
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.K00168.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-056384223
                      EETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                      +C+ Cg sF  + +Lk+H++ H
  Migut.K00168.1.p 63 TCEQCGASFQKPAHLKQHMQGH 84
                      6******************988 PP
2zf-C2H217.21.5e-0590114123
                       EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                       ++C+  dC+ s++rk++L+rH+  H
  Migut.K00168.1.p  90 FTCSvdDCHSSYRRKDHLNRHMLQH 114
                       89********************988 PP
3zf-C2H214.50.00011119144123
                       EEET..TTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                       ++C   +C+ +F+ +sn++rHi+  H
  Migut.K00168.1.p 119 FECRveNCKSRFTVQSNMTRHIKEfH 144
                       789999*****************988 PP
4zf-C2H218.36.4e-06159183123
                       EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                       y+C+   Cgk+F+  s L++H  +H
  Migut.K00168.1.p 159 YVCSehGCGKVFKYLSKLRKHEDSH 183
                       89*99****************9888 PP
5zf-C2H217.51.2e-05250274223
                       EET..TTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                       kC+   C+ +Fs+ snL++Hi+  H
  Migut.K00168.1.p 250 KCSveGCSLTFSNTSNLNQHIKAvH 274
                       688999***************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.9741946IPR007087Zinc finger, C2H2
SMARTSM00355251941IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.63E-1061114No hitNo description
PROSITE profilePS5015713.1526289IPR007087Zinc finger, C2H2
SMARTSM003550.0186284IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.9E-86388IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.0E-989116IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.9190119IPR007087Zinc finger, C2H2
SMARTSM003550.004690114IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028092114IPR007087Zinc finger, C2H2
SuperFamilySSF576671.6E-6117145No hitNo description
Gene3DG3DSA:3.30.160.606.4E-6117145IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.681119149IPR007087Zinc finger, C2H2
SMARTSM003550.24119144IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280121144IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.3E-6155183IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.97E-5156184No hitNo description
PROSITE profilePS5015710.97159188IPR007087Zinc finger, C2H2
SMARTSM003550.0031159183IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280161183IPR007087Zinc finger, C2H2
SMARTSM003554.6191216IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280193216IPR007087Zinc finger, C2H2
SMARTSM0035511219240IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.26E-8230287No hitNo description
Gene3DG3DSA:3.30.160.604.0E-7230271IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.572249279IPR007087Zinc finger, C2H2
SMARTSM003550.002249274IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280251274IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-4273301IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035515280306IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280282306IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MEKEGEGQRI PIFRDIRRYY CEYCGICRSK KTLIASHILT HHAEEAKEKE RDEEKEQGKK  60
LNTCEQCGAS FQKPAHLKQH MQGHSLERPF TCSVDDCHSS YRRKDHLNRH MLQHQGKLFE  120
CRVENCKSRF TVQSNMTRHI KEFHDESDGA DDTQNKEGYV CSEHGCGKVF KYLSKLRKHE  180
DSHVKLDSVE ALCAEPGCMK YFTNEQCLKE HIRSCHQYIT CDECGSKQLK KNIKRHMRMH  240
EESVSSERIK CSVEGCSLTF SNTSNLNQHI KAVHLELKPF ACTVPGCGMR FAFKHVRDHH  300
EQSGCHIHTL GDFEETDEQF RSRPRGGRKR NYPGIESLMR KRVCPPTESE LGSNEAFATQ  360
S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A4e-176721120155PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D4e-176721120155PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.K00168.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012857447.10.0PREDICTED: transcription factor IIIA
SwissprotQ84MZ41e-145TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A022Q2S20.0A0A022Q2S2_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36442447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-143transcription factor IIIA