PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.J01640.1.p | ||||||||
Common Name | LOC105949306, MIMGU_mgv1a013667mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | bHLH | ||||||||
Protein Properties | Length: 214aa MW: 24374.7 Da PI: 9.6028 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.1 | 3.7e-09 | 36 | 82 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+Er+RR+riN +++Lr+l + K +Ka+ L k+v+ +k+L Migut.J01640.1.p 36 ENHKEAERKRRERINGHLHRLRSLRLCN-----SKIDKASLLAKVVQRVKEL 82 68**********************8887.....7************999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.7E-11 | 27 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.833 | 33 | 82 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-10 | 36 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.93E-8 | 36 | 85 | No hit | No description |
Pfam | PF00010 | 1.6E-6 | 36 | 82 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.6E-6 | 39 | 88 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 0.00515 | 125 | 188 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 2.1E-4 | 125 | 188 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MQPKNSPEYS YLDQLLGGNY GFPARSDNRS ATAASENHKE AERKRRERIN GHLHRLRSLR 60 LCNSKIDKAS LLAKVVQRVK ELKQQTSEIV QHDQTFPSEA DEIEVFKHEE YYSFGGKSSS 120 VVKASLCCDD RADLVPDLIE ILKSLRLSPL RAEMVTLGGR IRNVMILAGD ENRTDESVLL 180 LRDALKTLVV RSNYVSGERS KRRRWFDERM IIG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 41 | 46 | ERKRRE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.J01640.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012828048.1 | 1e-156 | PREDICTED: transcription factor bHLH106 | ||||
Swissprot | Q9LET0 | 2e-51 | BH107_ARATH; Putative transcription factor bHLH107 | ||||
TrEMBL | A0A022PS65 | 1e-155 | A0A022PS65_ERYGU; Uncharacterized protein | ||||
STRING | Migut.J01640.1.p | 1e-156 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12841 | 17 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56770.1 | 9e-54 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.J01640.1.p |
Entrez Gene | 105949306 |
Publications ? help Back to Top | |||
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