PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.J01617.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family C2H2
Protein Properties Length: 354aa    MW: 38240.2 Da    PI: 8.6213
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.J01617.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72e-057698123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      y C++C+k Fs+k  L  H++ H
  Migut.J01617.1.p 76 YGCKYCDKKFSNKQALGGHQNAH 98
                      67******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.26E-672104No hitNo description
Gene3DG3DSA:3.30.160.608.5E-572101IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.96776103IPR007087Zinc finger, C2H2
PROSITE patternPS0002807898IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MDSSSSPTRN PKRPLDDSNV NPSSPEEAVA ANVANAIVVA PAAPAAPAPA AAAADANPPE  60
APVQVLIPQP QDDREYGCKY CDKKFSNKQA LGGHQNAHKM ERAMEKNPIV RQENPFAYTV  120
GGAGPSGAGD PATFTGLMMM MSNPSGSTNP NFLGSTFNRS HDFMNRSIVN WPYTSPHQQQ  180
QQQQQQQRQQ QQQQNAFQQQ NAFQMRYNNP PGFVPSRPLP GYNNVYNPGW TAGPAPVQAR  240
PGPPAPRVNN PYNYYQGQPS SYMQQQQQNH HQAQVMNNNH LRLPPATGGN GGGGAMMRPV  300
FNPGLSLGIG GGPRIRPGNM NPGGGNRNLQ LVVANERTDE QDEDSEMDLS LRL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.J01617.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012828004.10.0PREDICTED: nuclear transcription factor Y subunit beta-like
TrEMBLA0A022PQJ00.0A0A022PQJ0_ERYGU; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13342714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.11e-09zinc finger protein 2