PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.J01272.1.p

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

NAC

Protein Properties

Length: 353aa MW: 40683.3 Da PI: 6.195

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.J01272.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.4	4.7e-52	28	157	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 +ppGfrFhPtdee++v+yL kk + ++++ +i+evd++k+ePwdLpkk+k++ekew+ F +rdkky++gkr+nrat+ gyWkatgkdke++ Migut.J01272.1.p 28 MPPGFRFHPTDEEIIVHYLLKKSIDPRFSA-LAIAEVDLNKCEPWDLPKKAKTGEKEWFVFWRRDKKYPRGKRTNRATELGYWKATGKDKEIH 119 79***********************999.67***********999************************************** PP NAM 94 sk..kgelvglkktLvfykgrapkgektdWvmheyrle 129 +k k+ l+g++ktLvfykgrapkge+t+Wvmhe+rle Migut.J01272.1.p 120 TKskKNCLIGMRKTLVFYKGRAPKGENTNWVMHEFRLE 157 98444445*************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-57	23	182	IPR003441	NAC domain
PROSITE profile	PS51005	54.471	28	182	IPR003441	NAC domain
Pfam	PF02365	1.2E-25	29	156	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MEAGSAAGSP FVANNEEEEE LASVILGMPP GFRFHPTDEE IIVHYLLKKS IDPRFSALAI 60 AEVDLNKCEP WDLPKKAKTG EKEWFVFWRR DKKYPRGKRT NRATELGYWK ATGKDKEIHT 120 KSKKNCLIGM RKTLVFYKGR APKGENTNWV MHEFRLEGNS FHYTNFSSTP EEEWVVGRVF 180 QKKTGTRTTS STPCAKRLAR IDSFVDHLLE SPTPLSPSSS FLTHDEEHEE FLSMPTPPNY 240 YNINPNNNPT NFIINPQISH PNSVFIPHQS SSSLVYDHQY NQDYYEQNLN MCKMEPFDNS 300 SHNCVTSHQL DRSCDDINER RYKAEFDDQQ LDRSCDFSFS PEISDLDSIW TS*

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MEAGSAAGSP FVANNEEEEE LASVILGMPP GFRFHPTDEE IIVHYLLKKS IDPRFSALAI  60
AEVDLNKCEP WDLPKKAKTG EKEWFVFWRR DKKYPRGKRT NRATELGYWK ATGKDKEIHT  120
KSKKNCLIGM RKTLVFYKGR APKGENTNWV MHEFRLEGNS FHYTNFSSTP EEEWVVGRVF  180
QKKTGTRTTS STPCAKRLAR IDSFVDHLLE SPTPLSPSSS FLTHDEEHEE FLSMPTPPNY  240
YNINPNNNPT NFIINPQISH PNSVFIPHQS SSSLVYDHQY NQDYYEQNLN MCKMEPFDNS  300
SHNCVTSHQL DRSCDDINER RYKAEFDDQQ LDRSCDFSFS PEISDLDSIW TS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-50	26	184	15	167	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-50	26	184	15	167	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-50	26	184	15	167	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-50	26	184	15	167	NO APICAL MERISTEM PROTEIN
3swm_A	1e-49	26	184	18	170	NAC domain-containing protein 19
3swm_B	1e-49	26	184	18	170	NAC domain-containing protein 19
3swm_C	1e-49	26	184	18	170	NAC domain-containing protein 19
3swm_D	1e-49	26	184	18	170	NAC domain-containing protein 19
3swp_A	1e-49	26	184	18	170	NAC domain-containing protein 19
3swp_B	1e-49	26	184	18	170	NAC domain-containing protein 19
3swp_C	1e-49	26	184	18	170	NAC domain-containing protein 19
3swp_D	1e-49	26	184	18	170	NAC domain-containing protein 19
4dul_A	9e-50	26	184	15	167	NAC domain-containing protein 19
4dul_B	9e-50	26	184	15	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.J01272.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012851791.1	0.0	PREDICTED: NAC domain-containing protein 100-like
Swissprot	Q9FK44	1e-78	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	A0A022QFH6	0.0	A0A022QFH6_ERYGU; Uncharacterized protein (Fragment)
STRING	Migut.J01272.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04060.1	3e-75	NAC domain containing protein 46

Link Out ? help Back to Top
Phytozome	Migut.J01272.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]