PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.J00992.1.p

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

NAC

Protein Properties

Length: 327aa MW: 37914 Da PI: 4.7001

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.J00992.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	125.3	4.9e-39	6	131	2	127
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 ppG+rF Ptdeel+ +yL kk+++++l + +vi+ v+ ++ P L + ++kewyfF++r +kya+g+r+nr++ +g+Wka+ dk+++ Migut.J00992.1.p 6 PPGYRFMPTDEELIFDYLLKKIDNRPLAA-DVIQVVNFSDHGPDYLSrEYPPVGDKEWYFFTPRIRKYAKGSRPNRTAGNGFWKASCADKDIK 97 9***********************999.99**********844555699********************************** PP NAM 94 skkgelvglkktLvfykg.rapkgektdWvmheyr 127 +++ +g k tLvf++g ++++g ktdW+mhey+ Migut.J00992.1.p 98 F-NNKIIGHKMTLVFHEGiSSKDGIKTDWIMHEYT 131 9.999********989999*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-46	3	158	IPR003441	NAC domain
PROSITE profile	PS51005	46.225	5	159	IPR003441	NAC domain
Pfam	PF02365	8.4E-23	6	131	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MESKYPPGYR FMPTDEELIF DYLLKKIDNR PLAADVIQVV NFSDHGPDYL SREYPPVGDK 60 EWYFFTPRIR KYAKGSRPNR TAGNGFWKAS CADKDIKFNN KIIGHKMTLV FHEGISSKDG 120 IKTDWIMHEY TAIHPSRNKR DADDNMKLDD WVICRIHKNV SKSSSANKRR ANLLENQQQQ 180 EQVAVRENRQ EEEEQVAVRE NRGEEDEVVA SDRVREVVEA HDNLNDQYYY GINNNNINAA 240 ANSNANANAN VMDNCKDDKE EEWLDDDFVD INQLLMSMEE EGFIIDINAL LMTKEEEECF 300 QERLSQVQQP NQQPNQQGSI YQHAPK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-43	6	168	18	171	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-43	6	168	18	171	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-43	6	168	18	171	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-43	6	168	18	171	NO APICAL MERISTEM PROTEIN
3swm_A	5e-43	6	168	21	174	NAC domain-containing protein 19
3swm_B	5e-43	6	168	21	174	NAC domain-containing protein 19
3swm_C	5e-43	6	168	21	174	NAC domain-containing protein 19
3swm_D	5e-43	6	168	21	174	NAC domain-containing protein 19
3swp_A	5e-43	6	168	21	174	NAC domain-containing protein 19
3swp_B	5e-43	6	168	21	174	NAC domain-containing protein 19
3swp_C	5e-43	6	168	21	174	NAC domain-containing protein 19
3swp_D	5e-43	6	168	21	174	NAC domain-containing protein 19
4dul_A	5e-43	6	168	18	171	NAC domain-containing protein 19
4dul_B	5e-43	6	168	18	171	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.J00992.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012840108.1	0.0	PREDICTED: NAC transcription factor 29-like
TrEMBL	A0A022R631	0.0	A0A022R631_ERYGU; Uncharacterized protein (Fragment)
STRING	Migut.J00992.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14648	2	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15500.1	3e-43	NAC domain containing protein 3

Link Out ? help Back to Top
Phytozome	Migut.J00992.1.p