PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Migut.J00936.1.p | ||||||||
Common Name | LOC105970860, MIMGU_mgv1a010559mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
|
||||||||
Family | GRF | ||||||||
Protein Properties | Length: 310aa MW: 34798.8 Da PI: 9.2052 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 79.7 | 2.8e-25 | 84 | 128 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+ Migut.J00936.1.p 84 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVET 128 79****************************************985 PP | |||||||
2 | QLQ | 56.8 | 6.9e-20 | 15 | 49 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FT++Q+q+L++Q+l+yKy++ + P+Pp+Ll+ i+ Migut.J00936.1.p 15 PFTPSQWQELEHQALVYKYMVYGIPIPPDLLFTIR 49 9******************************9987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 6.3E-11 | 14 | 50 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.568 | 15 | 50 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.2E-14 | 15 | 49 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.448 | 84 | 128 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.7E-21 | 85 | 127 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 310 aa Download sequence Send to blast |
MMSNNNIGRS SRFNPFTPSQ WQELEHQALV YKYMVYGIPI PPDLLFTIRR SLHHHHSSST 60 TFLLHHHHSG SWNSFNMGFG KKIDPEPGRC RRTDGKKWRC SKEAYPDSKY CERHMHRGRN 120 RSRKPVETVL LPHSSTAANS PCNRNAATTT TTTTPLGNTL LPSHHPPPHF LYSHFLSESN 180 PTLCRNTSDG RAAANGGGGA DEHVFFPDGG GGSSSSSSSQ TKVLQYGYSS NCDLFGGQRM 240 IQNASLDKRD ELHPHKKVMH HFIDECPPKD DNGQYSDDKT TIMPMPIHRT QLSISINPNS 300 LHDFFITHK* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Migut.J00936.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012851137.1 | 0.0 | PREDICTED: growth-regulating factor 5 | ||||
TrEMBL | A0A022QE12 | 0.0 | A0A022QE12_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA743 | 23 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G13960.1 | 2e-49 | growth-regulating factor 5 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Migut.J00936.1.p |
Entrez Gene | 105970860 |