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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.J00633.1.p | ||||||||
Common Name | LOC105958360, MIMGU_mgv1a025208mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | LBD | ||||||||
Protein Properties | Length: 134aa MW: 15038.2 Da PI: 8.7316 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 106.5 | 2.2e-33 | 11 | 111 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 aCaaCk++rrkC ++C+la+yfp e++ +++nv +lFG +n lk+lk+++e+er++a++sl++eA++r++ Pv+G ++v +kl+ ++e++++e Migut.J00633.1.p 11 ACAACKHHRRKCDQNCALAKYFPPEKSDDYENVYHLFGIQNTLKILKSVDENERDAAIESLIMEARMRLEYPVHGHFSVARKLSIEIEKAEKE 103 7******************************************************************************************** PP DUF260 94 lallkeel 101 l+ +++++ Migut.J00633.1.p 104 LEIVRQKI 111 ***99985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.186 | 10 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.7E-31 | 11 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 134 aa Download sequence Send to blast |
MANAGPSVYK ACAACKHHRR KCDQNCALAK YFPPEKSDDY ENVYHLFGIQ NTLKILKSVD 60 ENERDAAIES LIMEARMRLE YPVHGHFSVA RKLSIEIEKA EKELEIVRQK IHICKGAVNR 120 AGPSTRGGRS DQP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-20 | 2 | 111 | 2 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-20 | 2 | 111 | 2 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.J00633.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012837822.1 | 5e-96 | PREDICTED: LOB domain-containing protein 7-like | ||||
TrEMBL | A0A022RE35 | 1e-94 | A0A022RE35_ERYGU; Uncharacterized protein | ||||
STRING | Migut.J00633.1.p | 2e-95 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2866 | 17 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72980.1 | 2e-23 | LOB domain-containing protein 7 |
Link Out ? help Back to Top | |
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Phytozome | Migut.J00633.1.p |
Entrez Gene | 105958360 |