PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.J00627.1.p | ||||||||
Common Name | MIMGU_mgv11b015323mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | LBD | ||||||||
Protein Properties | Length: 102aa MW: 12032 Da PI: 7.5596 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 65.7 | 1.1e-20 | 9 | 96 | 13 | 100 |
DUF260 13 akdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 ++C+la+yf+ae++++f+nv +lF ++n lk+lk++++eer+++++sl++eA++r++ P++ ++v ++l ++e++++el+ + ++ Migut.J00627.1.p 9 RQNCTLAKYFAAERSNDFENVYHLFVMQNTLKILKSVEKEERNATIESLIMEARMRLEHPMHYHFSVARELGFEVEKTEKELEIVCQK 96 689*******************************************************************************998776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 13.13 | 1 | 97 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.1E-17 | 7 | 93 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 102 aa Download sequence Send to blast |
MQAPTQKMRQ NCTLAKYFAA ERSNDFENVY HLFVMQNTLK ILKSVEKEER NATIESLIME 60 ARMRLEHPMH YHFSVARELG FEVEKTEKEL EIVCQKIHIC K* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.J00627.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012837818.1 | 5e-51 | PREDICTED: LOB domain-containing protein 7-like | ||||
Refseq | XP_012837821.1 | 5e-51 | PREDICTED: LOB domain-containing protein 7-like | ||||
TrEMBL | A0A022S1S3 | 2e-68 | A0A022S1S3_ERYGU; Uncharacterized protein | ||||
STRING | Migut.J00627.1.p | 3e-69 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2866 | 17 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 1e-14 | LOB domain-containing protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Migut.J00627.1.p |