PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.J00579.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | C3H | ||||||||
Protein Properties | Length: 289aa MW: 32700.7 Da PI: 8.0048 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20 | 1.2e-06 | 199 | 222 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k + C+++ + G C+ G++C+F+H+ Migut.J00579.1.p 199 KIPYCCYYIQ-GRCRKGEKCNFSHD 222 6688**9999.*************7 PP | |||||||
2 | zf-CCCH | 17.5 | 7.2e-06 | 228 | 250 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k +C+ +++ G+C Gd C+F H Migut.J00579.1.p 228 KSTPCK-YLAHGFCMKGDDCPFDH 250 6679**.9999************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 15 | 197 | 224 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.2E-4 | 197 | 223 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.79E-6 | 198 | 222 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.136 | 226 | 253 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-4 | 226 | 252 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.45E-6 | 228 | 251 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 8.531 | 256 | 279 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MMDALQELRE ELYLTAAEEF IKEYQDSLDS VRRNLAIYMD PCAAMSALNN PPKPISENYH 60 VADKKVDQLG VLHDRQLAEA EHILNYVLDF YLARPGVVNA DEIAFALERF LNKIQKATDS 120 YTVKLGISPY QNMSPYGDSL LVMMNKFQHM QLKAVDCGSD GKSGLGATET KNEKLKREEK 180 KKLLGVKRLS SPPVLKTKKI PYCCYYIQGR CRKGEKCNFS HDTVPLTKST PCKYLAHGFC 240 MKGDDCPFDH ELSKYPCVKH ASNYPCPRLP KCLFSHEIVK QLENATES* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.J00579.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012849421.1 | 0.0 | PREDICTED: uncharacterized protein LOC105969218 | ||||
Refseq | XP_012849422.1 | 0.0 | PREDICTED: uncharacterized protein LOC105969218 | ||||
TrEMBL | A0A022QJ66 | 2e-93 | A0A022QJ66_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7740 | 17 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04990.2 | 2e-06 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.J00579.1.p |