PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.J00556.1.p

Common Name

LOC105961220, MIMGU_mgv1a003700mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

C2H2

Protein Properties

Length: 570aa MW: 61235.2 Da PI: 9.4112

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.J00556.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16	3.5e-05	79	101	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H Migut.J00556.1.p 79 FICEICNKGFQRDQNLQLHRRGH 101 89*******************88 PP
2	zf-C2H2	12.5	0.00043	156	178	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ Migut.J00556.1.p 156 WKCEKCSKKYAVQSDWKAHSKTC 178 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.5E-5	78	101	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.64E-7	78	101	No hit	No description
SMART	SM00355	0.022	79	101	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.845	79	101	IPR007087	Zinc finger, C2H2
Pfam	PF12171	7.0E-5	79	101	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	81	101	IPR007087	Zinc finger, C2H2
SMART	SM00355	79	121	151	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.5E-4	144	177	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.64E-7	151	176	No hit	No description
SMART	SM00355	140	156	176	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 570 aa Download sequence Send to blast
MMSAGNVFSV PNSAASAAKV IFSHEFDPNP NPNPNPNSKP VSSNNASAAK KKRNLPGTPD 60 PDAEVIALSP KTLMATNRFI CEICNKGFQR DQNLQLHRRG HNLPWKLKQR AKTDLIKKKV 120 YICPEKNCVH HDPARALGDL TGIKKHFSRK HGEKKWKCEK CSKKYAVQSD WKAHSKTCGT 180 REYKCDCGTL FSRKDSFITH RAFCDALAEE SARNIVTTVG SNNNSCFNFT SDVNNNLIGN 240 PHEFSNINPT GMPHFSGAFR PEFAGNSFLG GDHHQNKPRS LSLWMDQQQA NNNINSQMND 300 HSSNMFGSNN NGLPDHHMMH MSAANNVYGS SSSSMGNYGN LSLSPLLPPQ HGLKEEQLLI 360 NNHGNKGNNA TSSSMMADSL ASLYSESHQL PAAAAKSSPP APMSATALLQ KAAQMGSTKS 420 NPNFFGNSVG VMMNNNSSSP SSSSTTNNLS FGGNAALAQN RSELHQVFGG GGQRPENPTA 480 DEMMNFSTAA VGNIGDGRHR HHQSMISQSA ALNMHSALHG VENSLTRDFL GIGGGDGGAG 540 AGGPFSPQEL AKFASMSSAM GLSHFTSNH*

Sequence ? help Back to Top

Protein Sequence Length: 570 aa Download sequence Send to blast

MMSAGNVFSV PNSAASAAKV IFSHEFDPNP NPNPNPNSKP VSSNNASAAK KKRNLPGTPD  60
PDAEVIALSP KTLMATNRFI CEICNKGFQR DQNLQLHRRG HNLPWKLKQR AKTDLIKKKV  120
YICPEKNCVH HDPARALGDL TGIKKHFSRK HGEKKWKCEK CSKKYAVQSD WKAHSKTCGT  180
REYKCDCGTL FSRKDSFITH RAFCDALAEE SARNIVTTVG SNNNSCFNFT SDVNNNLIGN  240
PHEFSNINPT GMPHFSGAFR PEFAGNSFLG GDHHQNKPRS LSLWMDQQQA NNNINSQMND  300
HSSNMFGSNN NGLPDHHMMH MSAANNVYGS SSSSMGNYGN LSLSPLLPPQ HGLKEEQLLI  360
NNHGNKGNNA TSSSMMADSL ASLYSESHQL PAAAAKSSPP APMSATALLQ KAAQMGSTKS  420
NPNFFGNSVG VMMNNNSSSP SSSSTTNNLS FGGNAALAQN RSELHQVFGG GGQRPENPTA  480
DEMMNFSTAA VGNIGDGRHR HHQSMISQSA ALNMHSALHG VENSLTRDFL GIGGGDGGAG  540
AGGPFSPQEL AKFASMSSAM GLSHFTSNH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	4e-37	152	213	3	64	Zinc finger protein JACKDAW
5b3h_F	4e-37	152	213	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.J00556.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012840912.1	0.0	PREDICTED: protein indeterminate-domain 9
Swissprot	Q9LVQ7	1e-113	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A022R4C4	0.0	A0A022R4C4_ERYGU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03150.1	1e-96	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Migut.J00556.1.p
Entrez Gene	105961220

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]