PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.J00492.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family Trihelix
Protein Properties Length: 411aa    MW: 46187.3 Da    PI: 9.3188
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.J00492.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix75.67.8e-24125229186
          trihelix   1 rWtkqevlaLiearremeerlrrgk..................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tse 74 
                       +Wt+++v++Li ++ ++++++  g                   +kk++W++vs++m+ergf +sp+qC++k+++lnkryk+++++ +k+ +++
  Migut.J00492.1.p 125 KWTDNMVKLLIMVVFYIGDEVVVGGggaaaegvdkkkggggalQKKGKWKSVSRAMMERGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtSCR 217
                       7**************7777777654445556666777777778**********************************************669* PP

          trihelix  75 ssstcpyfdqle 86 
                       ++++  ++d+++
  Migut.J00492.1.p 218 VVENQTLLDSMD 229
                       *********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.9E-21123255No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MESNPMSGAG IYSNVQQPGM LGLEMSLHHH HPLPPPPNQQ NPHLMPPQHH HPMPSYGHHH  60
DAAAAAEYLH PQTQQQPPKQ NTYPSAPKSK TQPLTLSDDD EPGFAADNSA DDGKRKMTSP  120
WQRMKWTDNM VKLLIMVVFY IGDEVVVGGG GAAAEGVDKK KGGGGALQKK GKWKSVSRAM  180
MERGFYVSPQ QCEDKFNDLN KRYKRVNDIL GKGTSCRVVE NQTLLDSMDH LSPKMKEEVK  240
KLLNSKHLFF REMCAYHNSC AHGGGSSGGG GDDDGGGSRD DDVAKKRVRK GDSELTNSGL  300
IQELDAELAR VLQDPTKGAM EKRRWMKTRL MRLEEESVGI QSQSFEIEKQ RLKWLKFSSK  360
KEREMEKEKL TNERRKLENE RMVLLIRQKE FDLLQHYYSN KKSDPSSITG *
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.J00492.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012831796.11e-138PREDICTED: FACT complex subunit Ssrp1
TrEMBLA0A022RNK21e-177A0A022RNK2_ERYGU; Uncharacterized protein
STRINGMigut.J00492.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67102231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.16e-74sequence-specific DNA binding transcription factors