 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Migut.J00492.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
|
| Family |
Trihelix |
| Protein Properties |
Length: 411aa MW: 46187.3 Da PI: 9.3188 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Migut.J00492.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 75.6 | 7.8e-24 | 125 | 229 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgk..................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tse 74
+Wt+++v++Li ++ ++++++ g +kk++W++vs++m+ergf +sp+qC++k+++lnkryk+++++ +k+ +++
Migut.J00492.1.p 125 KWTDNMVKLLIMVVFYIGDEVVVGGggaaaegvdkkkggggalQKKGKWKSVSRAMMERGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtSCR 217
7**************7777777654445556666777777778**********************************************669* PP
trihelix 75 ssstcpyfdqle 86
++++ ++d+++
Migut.J00492.1.p 218 VVENQTLLDSMD 229
*********998 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| Pfam | PF13837 | 3.9E-21 | 123 | 255 | No hit | No description |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0010629 | Biological Process | negative regulation of gene expression |
| GO:1900037 | Biological Process | regulation of cellular response to hypoxia |
| GO:0005634 | Cellular Component | nucleus |
| Sequence ? help Back to Top |
| Protein Sequence Length: 411 aa
Download sequence Send
to blast |
MESNPMSGAG IYSNVQQPGM LGLEMSLHHH HPLPPPPNQQ NPHLMPPQHH HPMPSYGHHH 60
DAAAAAEYLH PQTQQQPPKQ NTYPSAPKSK TQPLTLSDDD EPGFAADNSA DDGKRKMTSP 120
WQRMKWTDNM VKLLIMVVFY IGDEVVVGGG GAAAEGVDKK KGGGGALQKK GKWKSVSRAM 180
MERGFYVSPQ QCEDKFNDLN KRYKRVNDIL GKGTSCRVVE NQTLLDSMDH LSPKMKEEVK 240
KLLNSKHLFF REMCAYHNSC AHGGGSSGGG GDDDGGGSRD DDVAKKRVRK GDSELTNSGL 300
IQELDAELAR VLQDPTKGAM EKRRWMKTRL MRLEEESVGI QSQSFEIEKQ RLKWLKFSSK 360
KEREMEKEKL TNERRKLENE RMVLLIRQKE FDLLQHYYSN KKSDPSSITG *
|
| Best hit in Arabidopsis thaliana ? help
Back to Top |
| Hit ID |
E-value |
Description |
| AT3G10040.1 | 6e-74 | sequence-specific DNA binding transcription factors |
