PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.J00203.1.p | ||||||||
Common Name | MIMGU_mgv1a022546mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | MYB_related | ||||||||
Protein Properties | Length: 182aa MW: 20419.7 Da PI: 10.143 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.2 | 9.2e-09 | 7 | 43 | 11 | 47 |
HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky Migut.J00203.1.p 7 QFLLGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKY 43 577899******************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.279 | 1 | 48 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.11E-10 | 6 | 47 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.73E-6 | 6 | 44 | No hit | No description |
TIGRFAMs | TIGR01557 | 3.0E-11 | 6 | 47 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.8E-6 | 7 | 43 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-6 | 7 | 43 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
FSRFFRQFLL GLKKYGKGDW RNISRNFVTT RTPTQVASHA QKYFIRQLSG GKDKRRSSIH 60 DITTVNLDHE ANASSSSPEK DGPHSPEKSN FTLQPPHQHS LDGDIVVRAT YDSCLRNNNS 120 GEMMGFSSNC PQNGSLMITH LQGSSSFGIN LHEHDMHRID PHGLRLGHHG TVFQMHSTRH 180 S* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.J00203.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012832136.1 | 1e-133 | PREDICTED: transcription factor DIVARICATA-like, partial | ||||
TrEMBL | A0A022RP75 | 1e-126 | A0A022RP75_ERYGU; Uncharacterized protein (Fragment) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA16449 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58900.1 | 2e-38 | Homeodomain-like transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Migut.J00203.1.p |