PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.I01032.1.p
Common NameMIMGU_mgv1a003883mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family C2H2
Protein Properties Length: 579aa    MW: 62338.1 Da    PI: 8.5645
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.I01032.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.7e-0580102123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C++C+k F r  nL+ H r H
  Migut.I01032.1.p  80 FVCEICNKGFQRDQNLQLHRRGH 102
                       89*******************88 PP
2zf-C2H211.90.0007157179123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC +C+k +  +s+ k H +t+
  Migut.I01032.1.p 157 WKCDKCSKKYAVQSDWKAHSKTC 179
                       58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.0E-579102IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.59E-779102No hitNo description
SMARTSM003550.01780102IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.94980102IPR007087Zinc finger, C2H2
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
SMARTSM0035543122152IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.2E-4145178IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.59E-7152177No hitNo description
SMARTSM00355150157177IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MMKGLAATVE ENMSNLTSAS NEQASGSSSS NRNDNNGGIY FPPLNPPQPL KRKRNQPGHP  60
DPSAEVIALS PKTLMATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RSSKEVIRKK  120
VYVCPEVGCV HHDPSRALGD LTGIKKHFSR KHGEKKWKCD KCSKKYAVQS DWKAHSKTCG  180
TREYRCDCGT LFSRRDSFIT HRAFCDALAE ESARSVLSGG GGGAPPGSSS ISAHHQTINL  240
QFPNQEIPFQ NTIKKEHHHH HQSFTLIPEI QQWRLPPCPP TMDPRHHHHH HVVHGGPPLI  300
DLTPTPSSSS SIFQDFQPNP NPSSRNGNGG GGPTTPLPPY HHPPPPPHIS ATALLQKAAQ  360
MGSKSSTTPA SPAGAFIIPH HHNQQGHVTA SAGHDSDSTT GFGLNLSSRD DFTLNGLGNK  420
AAASAARVTG GDGSTVTVTG ASPPGGTNIN ITNNACSSFL HEMMMMNSSS NLHAGFEEGG  480
SSFDEESFRS FHATLGNFSS TRSSNSATAN EGGGGIGTTN DGMMTTRDFL GLRPLSQSDI  540
LSMAGLSNCI NTDNNSNHAA CINVDRDQNQ TTEKSWQV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-34153214364Zinc finger protein JACKDAW
5b3h_F1e-34153214364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106119KLKQRSSKEVIRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.I01032.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012856309.10.0PREDICTED: protein indeterminate-domain 7 isoform X2
RefseqXP_012856310.10.0PREDICTED: protein indeterminate-domain 7 isoform X2
TrEMBLA0A022PYE20.0A0A022PYE2_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-102indeterminate(ID)-domain 7