PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.I01028.3.p | ||||||||
Common Name | MIMGU_mgv1a002054mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | FAR1 | ||||||||
Protein Properties | Length: 722aa MW: 82810.2 Da PI: 8.6792 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 83 | 4.9e-26 | 11 | 97 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 ++Y+eYAk+vGF + k +s++s+ ++e+++++f C ++g++++++++ ++r++ ++gCka+++vk++ +gkw+++++++eHnHel p Migut.I01028.3.p 11 EYYKEYAKSVGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKRKPTGKWHIHSFVKEHNHELLP 97 69***************************************999877....9************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.8E-24 | 11 | 97 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.2E-23 | 208 | 301 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.151 | 486 | 524 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 3.9E-7 | 497 | 522 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 5.2E-7 | 499 | 526 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 722 aa Download sequence Send to blast |
MEFDTHEAAY EYYKEYAKSV GFGTAKLSSR RSRASKEFID AKFSCIRYGN KQQSDDAINP 60 RPSPKIGCKA SMHVKRKPTG KWHIHSFVKE HNHELLPDQA HFFRSHRNLD SVNNSDARVK 120 KKKVLKKYGA YQFSGTSIEN VIRSQHDRGR FLSLEEGGAQ SILEFCSQMH EENPKFFYAL 180 DFNEEHRLRN VFWVDAKGVD DFTHFGDVVS FDTTYFQSKY RIPLVLFIGV NHHIQPTLLG 240 CGLIADETLY TFIWLLQSWC LAMGGKSPSV LLSDQNEAIK AAVQMVFSET RHFFHLWHVL 300 EKIPRQLDYL NIWHETFVGK LNKCVYRSWI EQQFEKRWWK LIQKFNLQEH EWILSLYKDR 360 KLWAPAFMKD VSFAGLSAAS RSESLNSFFD KYINAETSLR DFIGNYKSIL EDRYEEEAKS 420 NFDAWHETPE LKSPSPFEKQ MLLVYSHEIF KKFQTEVLGA AACHLKREKE DGSTVVYGVK 480 DFENNQDFVV EWNELKLDVH CSCRSFQYKG YLCRHGIVVL QMSGVFIIPF KYILQRWTNA 540 ATSRIPLSEK LDEVQAKVRR YNDLCRRAII LGEEGSLSQD SYNTAGGTIN EALKQCADVN 600 KPSESDLRPE ISAPLAIQGA SGVNHNVGVN KVTSVNKGSK KTNSGKEPVK NGGITSRKGK 660 VPLEPQIANV GTRGIFQHMD MPGPLEYNSL YPRFLTTLLK GGGEMSKRSV DMLGEMLEEK 720 S* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.I01028.3.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012856303.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 4-like | ||||
Refseq | XP_012856304.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 4-like | ||||
Refseq | XP_012856305.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 4-like | ||||
Swissprot | Q6NQJ7 | 0.0 | FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4 | ||||
TrEMBL | A0A022Q4D2 | 0.0 | A0A022Q4D2_ERYGU; Uncharacterized protein | ||||
STRING | Migut.I01028.1.p | 0.0 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76320.1 | 0.0 | FAR1-related sequence 4 |
Link Out ? help Back to Top | |
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Phytozome | Migut.I01028.3.p |
Publications ? help Back to Top | |||
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