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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.I00906.1.p | ||||||||
Common Name | MIMGU_mgv1a001344mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 844aa MW: 92264.5 Da PI: 6.5917 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.8 | 9.1e-19 | 26 | 83 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++t+eq+e+Le+l++ +++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Migut.I00906.1.p 26 YVRYTPEQVEALERLYHDCPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 83 6789****************************************************97 PP | |||||||
2 | START | 173.2 | 1.6e-54 | 170 | 378 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galq 92 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s+++sg a+ra+g+v ++ v+e+l+d++ W ++++++++l+v+ ++ g+++ Migut.I00906.1.p 170 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCSGVAARACGLVGLEPS-RVAEILKDRPSWFRDCRAVDVLNVLPTAngGTIE 261 7899******************************************************.8888888888****************9999**** PP EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHH CS START 93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwll 181 l +++l+a+++l+p Rdf+ +Ry+ + +g+ v++++S++++q+ p+ +++vRae+lpSg+li+p+++g+s +++v+h + ++++++++l Migut.I00906.1.p 262 LLYMQLYAPTTLAPgRDFWLLRYTSVMDDGSMVVCERSLSNTQNGPSmpaVPNFVRAEMLPSGYLIRPCDGGGSIIHIVDHLNFEAWSVPEVL 354 **********************************************99999****************************************** PP HHHHHHHHHHHHHHHHHHTXXXXX CS START 182 rslvksglaegaktwvatlqrqce 205 r+l++s+++ ++k+++a+l+++++ Migut.I00906.1.p 355 RPLYESSTMLAQKITMAALRQLRQ 378 ********************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.532 | 20 | 84 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.3E-16 | 22 | 88 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 9.84E-17 | 24 | 87 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 8.06E-17 | 25 | 85 | No hit | No description |
Pfam | PF00046 | 2.2E-16 | 26 | 83 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-18 | 27 | 83 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 2.99E-6 | 77 | 116 | No hit | No description |
PROSITE profile | PS50848 | 24.971 | 160 | 361 | IPR002913 | START domain |
CDD | cd08875 | 5.81E-74 | 164 | 380 | No hit | No description |
SMART | SM00234 | 6.6E-41 | 169 | 379 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 7.9E-22 | 169 | 375 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 4.53E-38 | 169 | 381 | No hit | No description |
Pfam | PF01852 | 5.2E-52 | 170 | 378 | IPR002913 | START domain |
SuperFamily | SSF55961 | 4.4E-5 | 408 | 597 | No hit | No description |
Pfam | PF08670 | 8.9E-51 | 699 | 842 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010014 | Biological Process | meristem initiation | ||||
GO:0010075 | Biological Process | regulation of meristem growth | ||||
GO:0010087 | Biological Process | phloem or xylem histogenesis | ||||
GO:0048263 | Biological Process | determination of dorsal identity | ||||
GO:0080060 | Biological Process | integument development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 844 aa Download sequence Send to blast |
MAMSCKDSNK AAAAAAAAAA AMDGKYVRYT PEQVEALERL YHDCPKPSSM RRQQLIRECP 60 ILSNIEPKQI KVWFQNRRCR EKQRKEASRL QGVNRKLTAM NRLLMEENDR LQKQVSQLVY 120 ENGYFRQNNP SNALPTKDTS CESVVTSGQK HHLTPQHPPR DASPAGLLSI AEETLAEFLS 180 KATGTAVEWV QMPGMKPGPD SIGIVAISHG CSGVAARACG LVGLEPSRVA EILKDRPSWF 240 RDCRAVDVLN VLPTANGGTI ELLYMQLYAP TTLAPGRDFW LLRYTSVMDD GSMVVCERSL 300 SNTQNGPSMP AVPNFVRAEM LPSGYLIRPC DGGGSIIHIV DHLNFEAWSV PEVLRPLYES 360 STMLAQKITM AALRQLRQIA QDNSQSSVTN WGRRPAALRA LSHRLSRGFN EALNGFNDEG 420 WSLLGNDGMD DITILVNSNP DKLITLNTPF TNGYNSISNS VLCAKASMLL QNVPPAILLR 480 FLREHRSEWA DTSIDAYSAA AIKIGPRVGN FGGQVILPLA QTFEHEELLE VIKLEGVVQS 540 PEDAMMPRDV LLLQLCSGMD ENTVGTCAEL IFAPIDASFT DDVPLLPSGF RIIPLDSCKE 600 TGSPNRTLDL ASALEAGTAG AKSLNGVSMT GGATRSVMTI AFQFGFESHM QENVASIARQ 660 YVRSIISSVQ RVALALSPSH VGPHGSGLRS SLGNPEAHTL ARWICQSYRN YMGVELLKCS 720 GGGGHESILK AMWHHSDAIL CCSVKALPVF TFANQAGVDM LETTLVALQD IPLEKIFDDN 780 GRKNLCSEFP QIMNQGFASL QGGICLSSMG RPISYERAVA WKVLNEEDDA HCICFMFVNW 840 SFV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00200 | DAP | Transfer from AT1G52150 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.I00906.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012856468.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-15-like | ||||
Swissprot | Q9ZU11 | 0.0 | ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15 | ||||
TrEMBL | A0A022Q4S6 | 0.0 | A0A022Q4S6_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA457 | 24 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52150.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.I00906.1.p |
Publications ? help Back to Top | |||
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