PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.I00512.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family Trihelix
Protein Properties Length: 870aa    MW: 96165 Da    PI: 8.2209
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.I00512.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix59.48.8e-19777857186
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       +W+ +ev++Li++r e+++r++  k +++lWee+s+ +   g++rsp qCk+ w +l ++y+++k   k      ++++pyf++++
  Migut.I00512.1.p 777 KWKPEEVQKLIKLRGELHSRFQVLKGRMALWEEISSTLLLDGITRSPAQCKSLWTSLLQKYEECKGDTKT-----QKSWPYFEDVN 857
                       7****************************************************************99997.....456****9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.60.15.101.9E-6679329IPR001279Metallo-beta-lactamase
SuperFamilySSF562811.07E-7180494IPR001279Metallo-beta-lactamase
SMARTSM008492.8E-2692289IPR001279Metallo-beta-lactamase
PfamPF127065.5E-10104239IPR001279Metallo-beta-lactamase
PfamPF075212.1E-6435466IPR011108Zn-dependent metallo-hydrolase, RNA specificity domain
PROSITE profilePS500908.049770834IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.9E-6773836IPR009057Homeodomain-like
CDDcd122031.54E-20776841No hitNo description
PfamPF138372.4E-16776858No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009942Biological Processlongitudinal axis specification
GO:0060918Biological Processauxin transport
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 870 aa     Download sequence    Send to blast
MAASSAISVC PHKLLWCQQP KPRKNFVSCC VSIPSVVKGT QSSKIPNRRS GRSEGPGKSM  60
EDSVKRKMEQ FYEGSDGPPL RILPIGGLGE IGMNCMLVGN YDRYILIDAG IMFPDCEDLG  120
VQKIIPDTTF IKKWSHKIEA VIITHGHEDH IGALPWVIPA LDPHTPIFAS SFTMELIKKR  180
LKEFGIFVPS RLKIFKTKRR FVAGPFDVEP IRVTHSIPDC SGLVFRCSDG TILHTGDWKI  240
DESPLDGKVF DREALEELSK EGVTLMMSDS TNVLSPGRTL SESVVADSLL RHISAIQGRV  300
ITTQFASNIH RLGSVKAAAD LTGRKLVFVG MSLRTYLEAA WKDGKAPIDP STLVKVEDIE  360
AYAPKDLLIV TTGSQAEPRA ALNLASYGTS HSLKLNKEDV ILYSAKVIPG NETRVMKMLN  420
RISEIGSTVV MGKNELLHSS GHAHREELDE VLKIVKPQHF LPIHGELLFL KEHELLGKST  480
GIRHTTVIKN GEMLGVSHLR NRRVLSNGFI SLGKENLQLM YSDGDKAFGT STELCLDERV  540
RIASDGIIVI SMEIMRPQAT DNSVEKVLKG KIRITTRCLW LDKGKLLDAL HKAAHASLSS  600
CPVSCPLAHM ERTVSEVLRK MVRKYSSKRP EVIAIAIENP AGVLADEING KLSGKSRPGS  660
EIAALRRAVG GHEKKRQPVA VVDEDGNGLP LATSTPEPEL QVQETDEKVQ VKEVAINESD  720
DFWKPFTSSS VPIQLDSNID LLPEEQKEEA KEEIGDEVIA EVAKSQVKPS KAAKPNKWKP  780
EEVQKLIKLR GELHSRFQVL KGRMALWEEI SSTLLLDGIT RSPAQCKSLW TSLLQKYEEC  840
KGDTKTQKSW PYFEDVNNIL LNLESNASK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5a0t_A1e-868063819560RIBONUCLEASE J
5a0t_B1e-868063819560RIBONUCLEASE J
5a0v_A1e-868063819560RIBONUCLEASE J
5a0v_B1e-868063819560RIBONUCLEASE J
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250|UniProtKB:Q72JJ7, ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:22033332, ECO:0000269|PubMed:25871650}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.I00512.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:25871650}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012854576.10.0PREDICTED: uncharacterized protein LOC105974070
SwissprotQ84W560.0RNJ_ARATH; Ribonuclease J
TrEMBLA0A4D8YXA30.0A0A4D8YXA3_SALSN; Ribonuclease J
STRINGMigut.I00512.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58742331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63420.10.0Trihelix family protein
Publications ? help Back to Top
  1. Bryant N,Lloyd J,Sweeney C,Myouga F,Meinke D
    Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis.
    Plant Physiol., 2011. 155(4): p. 1678-89
    [PMID:21139083]
  2. Halpert M,Liveanu V,Glaser F,Schuster G
    The Arabidopsis chloroplast RNase J displays both exo- and robust endonucleolytic activities.
    Plant Mol. Biol., 2019. 99(1-2): p. 17-29
    [PMID:30511330]