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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.I00295.1.p | ||||||||
Common Name | MIMGU_mgv1a025009mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | NAC | ||||||||
Protein Properties | Length: 238aa MW: 27728.6 Da PI: 7.5021 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 58.3 | 2.7e-18 | 8 | 141 | 8 | 128 |
NAM 8 hPtdeelvveyLkkkvegkkleleevikevdiy..kvePwdLpk.......kvkaeekew.yfFskrdkkyatgkrknratksgyWkatgkdk 90 P+deel+++yL k g +l+ + ++e +iy +++Pw+ + + +++ k++ y +k + + ++r r tksg+Wk + + k Migut.I00295.1.p 8 VPSDEELINCYLLKVSMGIPLPW-NWMSEKEIYgeTTDPWEVLQdvhwedfHSETKFKHVtYVLTKLLR-VNGKTRIARRTKSGTWKGQTSGK 98 6*******************999.7899999984458****9643566644222333344244444444.4567899999************* PP NAM 91 evlsk.kgelvglkktLvfy....kgrapkgektdWvmheyrl 128 e++++ +g+l+gl k+++fy kgr+ + e+ +W+m+e++l Migut.I00295.1.p 99 EIYDEsSGNLIGLSKMFTFYknkpKGRSGEEEHGHWIMQEFSL 141 ***9978889**********7766688888899********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 21.325 | 1 | 163 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.48E-21 | 8 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-11 | 8 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MRIAPGVVPS DEELINCYLL KVSMGIPLPW NWMSEKEIYG ETTDPWEVLQ DVHWEDFHSE 60 TKFKHVTYVL TKLLRVNGKT RIARRTKSGT WKGQTSGKEI YDESSGNLIG LSKMFTFYKN 120 KPKGRSGEEE HGHWIMQEFS LAGVCLNFEL KFKDYAICRI TRILKITQFV ESLGCFQRKT 180 KRKRQRSSRR LAEDEGIEED RDAFSKMQKI DLDNIEFDFD IDIDDITLKD SDGVRRN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 176 | 183 | QRKTKRKR |
2 | 180 | 185 | KRKRQR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.I00295.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012841536.1 | 1e-120 | PREDICTED: protein CUP-SHAPED COTYLEDON 3-like isoform X1 | ||||
Refseq | XP_012841537.1 | 1e-120 | PREDICTED: protein CUP-SHAPED COTYLEDON 3-like isoform X2 | ||||
TrEMBL | A0A022QZV8 | 1e-176 | A0A022QZV8_ERYGU; Uncharacterized protein | ||||
STRING | Migut.I00295.1.p | 1e-176 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 9e-13 | NAC domain containing protein 83 |
Link Out ? help Back to Top | |
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Phytozome | Migut.I00295.1.p |