PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.H02352.1.p | ||||||||
Common Name | LOC105964958, MIMGU_mgv1a024009mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | MYB | ||||||||
Protein Properties | Length: 329aa MW: 36076.5 Da PI: 6.2654 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.2 | 8.1e-18 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l ++++++G +W++ ++ g++R++k+c++rw +yl Migut.H02352.1.p 15 KGPWTPEEDDKLMHYIHKHGHASWRSLPKLAGLNRCGKSCRLRWTNYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.7 | 1.1e-17 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++ +++++ lG++ W++Ia +++ gRt++++k++w+++l Migut.H02352.1.p 68 RGKFSQEEEQTILNLHSILGNK-WSAIATHLP-GRTDNEIKNFWNTHL 113 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.16 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.49E-31 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.8E-14 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-17 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-24 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.27E-11 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 27.013 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 8.8E-17 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-16 | 68 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.74E-12 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.3E-28 | 70 | 118 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MGRSPSSDES SGLKKGPWTP EEDDKLMHYI HKHGHASWRS LPKLAGLNRC GKSCRLRWTN 60 YLRPDIKRGK FSQEEEQTIL NLHSILGNKW SAIATHLPGR TDNEIKNFWN THLKKKLIQM 120 GFDPMTHQPR SDIFSTLPHL LALANLIVET NPSWEEQAMR LQAEAVQMAR LNQCLHYILQ 180 PPPPPPPPPF QNDGGINTNT IQDLASTLSL LNSLNEGSNN ILSHHLEAAA PPPPPLAGGG 240 YLQESAPSFS HLPDLQDFQT SFCGQGENSN SPSSPWMLPD LSASAAAPPT ETSMTNITAG 300 GDACSTSSYG GAQMWSELLD DPLFHEIA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-28 | 13 | 117 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00503 | DAP | Transfer from AT5G10280 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.H02352.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012844918.1 | 0.0 | PREDICTED: transcription factor MYB39 | ||||
Swissprot | Q9SBF3 | 1e-94 | MYB92_ARATH; Transcription factor MYB92 | ||||
TrEMBL | A0A022QQP0 | 0.0 | A0A022QQP0_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34670.1 | 3e-91 | myb domain protein 93 |
Link Out ? help Back to Top | |
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Phytozome | Migut.H02352.1.p |
Entrez Gene | 105964958 |
Publications ? help Back to Top | |||
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