PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.H02352.1.p
Common NameLOC105964958, MIMGU_mgv1a024009mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB
Protein Properties Length: 329aa    MW: 36076.5 Da    PI: 6.2654
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.H02352.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.28.1e-181562148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd++l ++++++G  +W++ ++  g++R++k+c++rw +yl
  Migut.H02352.1.p 15 KGPWTPEEDDKLMHYIHKHGHASWRSLPKLAGLNRCGKSCRLRWTNYL 62
                      79********************************************97 PP

2Myb_DNA-binding55.71.1e-1768113148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg++++eE++ +++++  lG++ W++Ia +++ gRt++++k++w+++l
  Migut.H02352.1.p  68 RGKFSQEEEQTILNLHSILGNK-WSAIATHLP-GRTDNEIKNFWNTHL 113
                       89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.161062IPR017930Myb domain
SuperFamilySSF466897.49E-3112109IPR009057Homeodomain-like
SMARTSM007176.8E-141464IPR001005SANT/Myb domain
PfamPF002493.9E-171562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-241669IPR009057Homeodomain-like
CDDcd001674.27E-111762No hitNo description
PROSITE profilePS5129427.01363117IPR017930Myb domain
SMARTSM007178.8E-1767115IPR001005SANT/Myb domain
PfamPF002492.2E-1668113IPR001005SANT/Myb domain
CDDcd001671.74E-1270113No hitNo description
Gene3DG3DSA:1.10.10.608.3E-2870118IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MGRSPSSDES SGLKKGPWTP EEDDKLMHYI HKHGHASWRS LPKLAGLNRC GKSCRLRWTN  60
YLRPDIKRGK FSQEEEQTIL NLHSILGNKW SAIATHLPGR TDNEIKNFWN THLKKKLIQM  120
GFDPMTHQPR SDIFSTLPHL LALANLIVET NPSWEEQAMR LQAEAVQMAR LNQCLHYILQ  180
PPPPPPPPPF QNDGGINTNT IQDLASTLSL LNSLNEGSNN ILSHHLEAAA PPPPPLAGGG  240
YLQESAPSFS HLPDLQDFQT SFCGQGENSN SPSSPWMLPD LSASAAAPPT ETSMTNITAG  300
GDACSTSSYG GAQMWSELLD DPLFHEIA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28131175108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00503DAPTransfer from AT5G10280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.H02352.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012844918.10.0PREDICTED: transcription factor MYB39
SwissprotQ9SBF31e-94MYB92_ARATH; Transcription factor MYB92
TrEMBLA0A022QQP00.0A0A022QQP0_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.13e-91myb domain protein 93
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]