PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Migut.H02320.1.p | ||||||||
Common Name | LOC105964949, MIMGU_mgv11b019145mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 191aa MW: 20537.3 Da PI: 4.6531 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.9 | 9.6e-05 | 1 | 37 | 16 | 55 |
HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +N+ ++ r+l+P++ ++++ + a+i+ A++++k+L+ Migut.H02320.1.p 1 MNDYLAVFRSLMPPS---YAQRGDQASIVGGAINFVKELE 37 8**************...*******************995 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.22 | 1 | 36 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-4 | 1 | 48 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.28E-8 | 1 | 55 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.18E-5 | 1 | 41 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 191 aa Download sequence Send to blast |
MNDYLAVFRS LMPPSYAQRG DQASIVGGAI NFVKELEQLL QFLEAQNPAN QLQPPPSGGG 60 AATYSGLFSK IFTFPQYSTS PSAAVDAAAT TAEERRSGVA DIEVTVVESH ANIKLLTKRR 120 PKQLLKLVAG FQSVYLTILH LNITAAAVDE SVLYSFSVKV EDECELTTVN EIATTVHEIV 180 GMIQQESLSS * |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Migut.H02320.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012844909.1 | 1e-137 | PREDICTED: transcription factor bHLH96-like | ||||
Swissprot | Q9C7T4 | 5e-59 | BH096_ARATH; Transcription factor bHLH96 | ||||
TrEMBL | A0A022QUK8 | 1e-136 | A0A022QUK8_ERYGU; Uncharacterized protein | ||||
STRING | Migut.H02320.1.p | 1e-137 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1996 | 24 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G72210.1 | 1e-51 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Migut.H02320.1.p |
Entrez Gene | 105964949 |
Publications ? help Back to Top | |||
---|---|---|---|
|