PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.H02300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | bHLH | ||||||||
Protein Properties | Length: 243aa MW: 26018.6 Da PI: 9.6292 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.1 | 6.5e-13 | 58 | 104 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h+e+ErrRR+riN +++L+++lP+ K +Ka+ L +Av+ +k+L Migut.H02300.1.p 58 NSHKEAERRRRKRINGHIATLKSILPNT-----IKTDKASLLGEAVKRVKEL 104 68*************************8.....69************99988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.18 | 55 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.0E-10 | 58 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.57E-12 | 59 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.8E-13 | 59 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-10 | 61 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MFSIPSLYEL GACSDNSYDN NNNNILQGVF TTPPPLTETH ETLSPGSTAE AKAAAASNSH 60 KEAERRRRKR INGHIATLKS ILPNTIKTDK ASLLGEAVKR VKELNKKTAE LTNGGEEEDN 120 GVKTAGAAGM LMIPSETDEL KVSRCEKTGL TKASLSCDDR AEIITEMITA VKAAEGKVVR 180 AEMSTVGGRT KSILWVKFGG ENDVGLGTLR RGLRMVMDKS TLLAGSGQGL PGNNKRARYY 240 HL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.H02300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012844971.1 | 1e-178 | PREDICTED: transcription factor bHLH30-like | ||||
TrEMBL | A0A022QTQ3 | 1e-139 | A0A022QTQ3_ERYGU; Uncharacterized protein | ||||
STRING | Migut.H02300.1.p | 1e-177 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7283 | 22 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 2e-30 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.H02300.1.p |