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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Migut.H02298.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family |
MIKC_MADS |
Protein Properties |
Length: 223aa MW: 25546.1 Da PI: 6.7946 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Migut.H02298.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 86.4 | 1.6e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
k+ien rqvtfskRr g++KKAeELS+LCda+v +iifsstgkl+eyss
Migut.H02298.1.p 9 KKIENVAARQVTFSKRRRGLFKKAEELSILCDADVGLIIFSSTGKLFEYSS 59
68***********************************************96 PP
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2 | K-box | 23.9 | 1.7e-09 | 94 | 161 | 21 | 88 |
K-box 21 lakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88
++ L+ke+ + +++R++ Ge+L+ L ++eL++Le+ Le +l+++ +kK+ ++ +ee + +++
Migut.H02298.1.p 94 ISWLNKEVAERSQQLRRMRGEELDGLGIEELHRLEKSLELGLNRVMEKKKMQGRQLMEENRLLRQQVA 161
566788888888999*********************************99877777776666655554 PP
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Protein Features
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00432 | 4.8E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.702 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.61E-39 | 2 | 75 | No hit | No description |
PRINTS | PR00404 | 1.2E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.57E-30 | 3 | 74 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 9.482 | 87 | 180 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 6.1E-8 | 92 | 162 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 223 aa
Download sequence Send
to blast |
MAREKIKIKK IENVAARQVT FSKRRRGLFK KAEELSILCD ADVGLIIFSS TGKLFEYSST 60 SMKEIVERHN LHSKNLDKLE QPSLELQLVE DSNISWLNKE VAERSQQLRR MRGEELDGLG 120 IEELHRLEKS LELGLNRVME KKKMQGRQLM EENRLLRQQV ADMENNGGGS KTRITESEKR 180 VYYEEGQSSE SVANVCNSAG PPQDYYDCSD TSLKLELVYF IP*
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Functional Description ? help
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Source |
Description |
UniProt | Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KP172241 | 0.0 | KP172241.1 Erythranthe guttata short vegetative phase 254 (SVP254) mRNA, partial cds. |