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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.H02266.1.p | ||||||||
Common Name | MIMGU_mgv1a024641mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | GRAS | ||||||||
Protein Properties | Length: 533aa MW: 57367.3 Da PI: 4.8434 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 380.5 | 2e-116 | 179 | 527 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 lv++L++cAeav++++++la+al++++ la ++ +m+++aa+f+eAL +r+++ ++p+++++++ +++l + f+e+ P+lk Migut.H02266.1.p 179 LVHTLMACAEAVQQENMKLADALVKHVGILAESQVGAMRKVAACFAEALVRRIYK--------IRPQPEENSSYADVLEM--HFYETAPYLK- 260 689****************************************************........67777765555555554..5*******97. PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186 vH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p+++++++l+++g++La++Ae++gv+fef+ +va++l Migut.H02266.1.p 261 ------------------VHVIDFGLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLAETIGVEFEFRGFVANSL 335 ..................8************************************************************************** PP GRAS 187 edleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklp 276 +dl+ ++L++kp E++aVn+v++lhrll++++++e+ vL ++ + Pk+v+vveqeadhn+ F++rf e+l+yys++fdsl ++l Migut.H02266.1.p 336 ADLDAKMLDIKPgdYETVAVNSVFELHRLLARPGAVEK----VLGSIRAMGPKIVTVVEQEADHNGVVFMDRFNESLHYYSTMFDSLeGSGLT 424 ************888***********************....*********************************************666777 PP GRAS 277 res....eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkd 364 + + ++ ++ +++lgr+i+nvvac gaer+erhetl+kWr+r+++aGF+p++l+++a kqa++ll+ ++ +dgyrvee++g+l+lgW++ Migut.H02266.1.p 425 QPDggggGQDLFMTEVYLGRQICNVVACDGAERVERHETLAKWRRRMGSAGFEPAHLGSNAFKQASMLLALFAgGDGYRVEENDGCLMLGWHT 517 77688999************************************************************************************* PP GRAS 365 rpLvsvSaWr 374 rpL+++SaWr Migut.H02266.1.p 518 RPLIATSAWR 527 *********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF12041 | 6.7E-31 | 34 | 101 | IPR021914 | Transcriptional factor DELLA, N-terminal |
SMART | SM01129 | 5.8E-29 | 34 | 109 | No hit | No description |
PROSITE profile | PS50985 | 46.927 | 153 | 506 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.8E-114 | 179 | 527 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 533 aa Download sequence Send to blast |
MKRDRDRGGK AAAVSGGTTA GKGKMWAEAD AGMDELLAVL GYKVKSSDMA DVAEKLEQLE 60 VAMGTTAMED GVSSLSTDTT VHYNPSDLSG WVGSMLSELS VIPDQIGVSG GGNLINDDDL 120 RAIPGGAILG NDSESAKKRI KFDSRVEFLE NGCSAAAPPP PPLPRAVVLV DSQEAGVRLV 180 HTLMACAEAV QQENMKLADA LVKHVGILAE SQVGAMRKVA ACFAEALVRR IYKIRPQPEE 240 NSSYADVLEM HFYETAPYLK VHVIDFGLKQ GMQWPALMQA LALRPGGPPA FRLTGIGPPQ 300 PDNTDALQQV GWKLAQLAET IGVEFEFRGF VANSLADLDA KMLDIKPGDY ETVAVNSVFE 360 LHRLLARPGA VEKVLGSIRA MGPKIVTVVE QEADHNGVVF MDRFNESLHY YSTMFDSLEG 420 SGLTQPDGGG GGQDLFMTEV YLGRQICNVV ACDGAERVER HETLAKWRRR MGSAGFEPAH 480 LGSNAFKQAS MLLALFAGGD GYRVEENDGC LMLGWHTRPL IATSAWRLTE VE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 4e-49 | 186 | 526 | 26 | 378 | Protein SCARECROW |
5b3h_A | 3e-49 | 186 | 526 | 25 | 377 | Protein SCARECROW |
5b3h_D | 3e-49 | 186 | 526 | 25 | 377 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). Its degradation is not essential for germination. {ECO:0000250, ECO:0000269|PubMed:15347801}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.H02266.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012845098.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: DELLA protein GAI | ||||
Swissprot | Q7Y1B6 | 0.0 | GAI_SOLLC; DELLA protein GAI | ||||
TrEMBL | A0A022QUC1 | 0.0 | A0A022QUC1_ERYGU; Uncharacterized protein | ||||
STRING | Migut.H02266.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2126 | 24 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14920.1 | 0.0 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.H02266.1.p |
Publications ? help Back to Top | |||
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