PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

WOX

Protein Properties

Length: 275aa MW: 30603.9 Da PI: 4.911

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.H02206.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.7	1.3e-20	90	150	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + +ps++++++++++l +++e++V++WFqNrRa+ k+ Migut.H02206.1.p 90 RQRWTPTPMQLQILERIFDQgVGTPSKQKIKDITTELsqhgQISETNVYNWFQNRRARSKR 150 89***************99************************************97 PP
2	Wus_type_Homeobox	104.3	8.2e-34	90	152	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 r+RWtPtp Q++iLe+++++G+ tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq Migut.H02206.1.p 90 RQRWTPTPMQLQILERIFDQGVGTPSKQKIKDITTELSQHGQISETNVYNWFQNRRARSKRKQ 152 89***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.7E-16	85	158	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.107	86	151	IPR001356	Homeobox domain
SMART	SM00389	1.3E-13	88	155	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.22E-17	88	154	IPR009057	Homeodomain-like
Pfam	PF00046	2.0E-18	90	150	IPR001356	Homeobox domain
CDD	cd00086	6.85E-12	90	152	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MMEWEKQPPQ QAEEPSGGGG GGGGGMYVKV MTDEQMEVLR KQIAVYATIC EQLVELHKTL 60 TSQNDLSGVR LGNLYCDPLM TSGAHKITGR QRWTPTPMQL QILERIFDQG VGTPSKQKIK 120 DITTELSQHG QISETNVYNW FQNRRARSKR KQHAPQSNNN NNGESEVETE VESSNEKKTN 180 TDESFQPQNI LSSNSEDLCF QNPQSSSAVD PRTSKAEPTL PQEVSSKFGG GFGQMPSFYG 240 SMLPNSRMEQ FIGKIEVPGN YNPYLQQDDY NIDG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	143	151	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00617	PBM	Transfer from AT4G35550	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.H02206.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012845314.1	0.0	PREDICTED: WUSCHEL-related homeobox 8
Swissprot	Q5QMM3	1e-85	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A022QQ64	0.0	A0A022QQ64_ERYGU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5675	24	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	2e-79	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	Migut.H02206.1.p
Entrez Gene	105965319

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]