PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Migut.H01739.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 108aa MW: 12370.7 Da PI: 4.7014 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.2 | 9.1e-09 | 4 | 51 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 rWT eE +++ d+ ++ g+ +W++Ia+++ ++t+ ++ ++ + Migut.H01739.1.p 4 SRWTWEENKQFEDGLVEFAGDcpnRWERIAARIA-TKTAAEVEQHFAVL 51 59*****************99*************.**********9765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.702 | 1 | 52 | IPR017877 | Myb-like domain |
SMART | SM00717 | 5.9E-4 | 2 | 54 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.83E-11 | 4 | 60 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.6E-6 | 5 | 51 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.90E-5 | 5 | 52 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-4 | 5 | 53 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 108 aa Download sequence Send to blast |
MVNSRWTWEE NKQFEDGLVE FAGDCPNRWE RIAARIATKT AAEVEQHFAV LLDDVAAIES 60 GVIELPEYDE SDGFRSPESR KSPNRSEKKQ VAPQRKVARP WTEDEHR* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Migut.H01739.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012841831.1 | 1e-74 | PREDICTED: transcription factor DIVARICATA-like | ||||
TrEMBL | A0A0K1SBI7 | 2e-49 | A0A0K1SBI7_REHGL; MYB-related protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G11280.2 | 4e-13 | MYB family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Migut.H01739.1.p |