PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.H01646.1.p
Common NameLOC105962166, MIMGU_mgv1a025187mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family NAC
Protein Properties Length: 327aa    MW: 37047.1 Da    PI: 7.8443
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.H01646.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.11.4e-5291391128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                       +ppGfrFhPtdeel+ +yL+kkv+ ++++l +vi+evd++k+ePwdL++  ++ +  +++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk
  Migut.H01646.1.p   9 VPPGFRFHPTDEELLYYYLRKKVSYEPIDL-DVIREVDLNKLEPWDLKEkcRIGSgPQNDWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDK 100
                       69****************************.9***************952444443456********************************** PP

               NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        ++++ + + +g++ktLvfy+grap+g+ktdW+mheyrl
  Migut.H01646.1.p 101 GIHVSnSAKRIGMRKTLVFYTGRAPHGHKTDWIMHEYRL 139
                       **99856677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.58E-595161IPR003441NAC domain
PROSITE profilePS5100558.7929161IPR003441NAC domain
PfamPF023653.2E-2810139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003002Biological Processregionalization
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0010455Biological Processpositive regulation of cell fate commitment
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MAGNGQLSVP PGFRFHPTDE ELLYYYLRKK VSYEPIDLDV IREVDLNKLE PWDLKEKCRI  60
GSGPQNDWYF FSHKDKKYPT GTRTNRATTA GFWKATGRDK GIHVSNSAKR IGMRKTLVFY  120
TGRAPHGHKT DWIMHEYRLD DDNLNTQIQE DGWVVCRVFK KKNHTRSGNF QSELDQQETV  180
VPFGTALPGS TFDHHKQNSD QPQYNNNNNN NYTFDHHHHN QSSSSSMQLP QLLSPDTAPP  240
PFYSSLPVDL QNSQNLLTLI PGGAGPSSGG AGGLILPEKF SGDWSFLDKL LANQQLSQVA  300
DHSVQPGQRF PFPYLGFEPD YSRYSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-51616614170NO APICAL MERISTEM PROTEIN
1ut4_B7e-51616614170NO APICAL MERISTEM PROTEIN
1ut7_A7e-51616614170NO APICAL MERISTEM PROTEIN
1ut7_B7e-51616614170NO APICAL MERISTEM PROTEIN
3swm_A7e-51616617173NAC domain-containing protein 19
3swm_B7e-51616617173NAC domain-containing protein 19
3swm_C7e-51616617173NAC domain-containing protein 19
3swm_D7e-51616617173NAC domain-containing protein 19
3swp_A7e-51616617173NAC domain-containing protein 19
3swp_B7e-51616617173NAC domain-containing protein 19
3swp_C7e-51616617173NAC domain-containing protein 19
3swp_D7e-51616617173NAC domain-containing protein 19
4dul_A7e-51616614170NAC domain-containing protein 19
4dul_B7e-51616614170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00250DAPTransfer from AT1G79580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.H01646.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012841907.10.0PREDICTED: NAC domain-containing protein 76-like
SwissprotQ9MA171e-109SMB_ARATH; Protein SOMBRERO
TrEMBLA0A022QYZ40.0A0A022QYZ4_ERYGU; Uncharacterized protein
STRINGMigut.H01646.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13424297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.31e-94NAC family protein
Publications ? help Back to Top
  1. Fendrych M, et al.
    Programmed cell death controlled by ANAC033/SOMBRERO determines root cap organ size in Arabidopsis.
    Curr. Biol., 2014. 24(9): p. 931-40
    [PMID:24726156]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]
  3. Karve R,Suárez-Román F,Iyer-Pascuzzi AS
    The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release.
    Plant Physiol., 2016. 171(3): p. 2101-11
    [PMID:27221617]
  4. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]