PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.H01490.1.p

Common Name

LOC105951474, MIMGU_mgv1a009107mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

LSD

Protein Properties

Length: 354aa MW: 38682.9 Da PI: 4.1581

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.H01490.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	40.3	5e-13	296	320	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC +lL+YP GAp+V+C++C +V Migut.H01490.1.p 296 CGGCEVLLMYPHGAPAVQCSSCRFV 320 **********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	1.0E-8	255	285	IPR005735	Zinc finger, LSD1-type
Gene3D	G3DSA:2.20.25.100	2.9E-4	274	322	IPR023407	Ribosomal protein S27e, zinc-binding domain
TIGRFAMs	TIGR01053	9.0E-10	293	321	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.3E-11	296	320	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MPEENNQQIV ATEEEEEDDD DDDGPPPGFQ CIITPPPPPP PPQPETTEAA ADDEEDDDGP 60 PPGFHSIAPK PPSPLPSSDM ERDIKQEDIE DDDDDDDGPP PGWEFSTLVN ALPPPKTTDI 120 SDIKIENDEE LDEGPPPGWG TVLLNQMPPP STPPLRQSSI NSSNIETDSK PKFTKNDDEV 180 SPLMSQCTPM QGHSSPATTP PLNQLPSAEL PCDTGNKEDD KKIRDKRPTS ALQQLPPTPY 240 PLTPALKQSI SGKAQLVCGT CRNLCLYQRG AKWVQCPGCQ EVNFVLEAHE VGQVKCGGCE 300 VLLMYPHGAP AVQCSSCRFV TEIGAQNRRP PLSVQQDQVR AQARRRRRFN RVR*

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MPEENNQQIV ATEEEEEDDD DDDGPPPGFQ CIITPPPPPP PPQPETTEAA ADDEEDDDGP  60
PPGFHSIAPK PPSPLPSSDM ERDIKQEDIE DDDDDDDGPP PGWEFSTLVN ALPPPKTTDI  120
SDIKIENDEE LDEGPPPGWG TVLLNQMPPP STPPLRQSSI NSSNIETDSK PKFTKNDDEV  180
SPLMSQCTPM QGHSSPATTP PLNQLPSAEL PCDTGNKEDD KKIRDKRPTS ALQQLPPTPY  240
PLTPALKQSI SGKAQLVCGT CRNLCLYQRG AKWVQCPGCQ EVNFVLEAHE VGQVKCGGCE  300
VLLMYPHGAP AVQCSSCRFV TEIGAQNRRP PLSVQQDQVR AQARRRRRFN RVR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.H01490.1.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012830377.1	0.0	PREDICTED: formin-like protein 3 isoform X1
TrEMBL	A0A022RTK9	0.0	A0A022RTK9_ERYGU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11642	22	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	2e-31	lsd one like 2

Link Out ? help Back to Top
Phytozome	Migut.H01490.1.p
Entrez Gene	105951474