PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.H01467.1.p
Common NameLOC105951448, MIMGU_mgv1a012155mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family NAC
Protein Properties Length: 261aa    MW: 29550.3 Da    PI: 9.4495
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.H01467.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM103.92.1e-32391931128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........ 77 
                       lp+G++F+P+d+e++ ++L++kv +++      ++++   i+   +i++++P++Lp  vk++ +  +fF++ +k+y+tg+rk+r+        
  Migut.H01467.1.p  39 LPAGVKFDPSDQEIL-QHLEAKVFSDTrklhplIDEFIPtIEGEnGICYTHPEKLP-GVKKDGQVRHFFHRPSKAYTTGTRKRRKvnsdntid 129
                       799***********9.99****999986665443333333665557**********.677778889******************845655543 PP

               NAM  78 tksgyWkatgkdkevlsk...........kgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                         + +W++tgk+++++++           ++  +g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  Migut.H01467.1.p 130 GGETRWHKTGKTRPIFVStagllllseknNNIIKGYKKILVLYtnYGRQRKPEKTNWVMHQYHL 193
                       33778************97777777665444459*********66589**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.19E-3534212IPR003441NAC domain
PROSITE profilePS5100531.67839212IPR003441NAC domain
PfamPF023651.9E-1440193IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MKWCDDHNNN NRIRTVICPS CGHTVKLQDQ TGVQDLPGLP AGVKFDPSDQ EILQHLEAKV  60
FSDTRKLHPL IDEFIPTIEG ENGICYTHPE KLPGVKKDGQ VRHFFHRPSK AYTTGTRKRR  120
KVNSDNTIDG GETRWHKTGK TRPIFVSTAG LLLLSEKNNN IIKGYKKILV LYTNYGRQRK  180
PEKTNWVMHQ YHLGDNEDEK EGELVVSKVF YQTQPRQCGG SSNVTKDAIV ISSSSNIIKN  240
ASFVEYYDRN STTSFISSIQ *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.H01467.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012830333.10.0PREDICTED: NAC domain-containing protein 73-like
SwissprotO494591e-114NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A022RUE60.0A0A022RUE6_ERYGU; Uncharacterized protein
STRINGMigut.H01467.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28752454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-109NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]