PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.H01353.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family TCP
Protein Properties Length: 393aa    MW: 42048.9 Da    PI: 7.5835
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.H01353.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP103.63.2e-32461932123
               TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg...... 88 
                        g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWLl++a ++i +l+  s++ +++  +++ s ++     +      
  Migut.H01353.1.p  46 SGGKDRHSKVLTSKGLRDRRVRLSVNTAIQFYDLQDRLGLDQPSKAVEWLLKAAAASITDLPPMSNPFPESP-KQQLSDEKI----Klssaag 133
                       689*************************************************************55544222.111111111....1112234 PP

               TCP  89 ........................kaaksaakskksqksaasalnlak.esrakararar 123
                                                  ks+a+s++s++s+ s l+l++ e   ka+ +++
  Migut.H01353.1.p 134 sdllafdsgevdmdggeisylrqqMPTKSSACSNNSETSKGSGLSLSRsENWIKADNKKE 193
                       556777777788888888888875444555577777777777777777444455555433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.0E-3447199IPR005333Transcription factor, TCP
PROSITE profilePS5136930.86548106IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MDELNPDEEE GANKRRAPND AVDLYGGVGR FHGWPSSRIV RVSRASGGKD RHSKVLTSKG  60
LRDRRVRLSV NTAIQFYDLQ DRLGLDQPSK AVEWLLKAAA ASITDLPPMS NPFPESPKQQ  120
LSDEKIKLSS AAGSDLLAFD SGEVDMDGGE ISYLRQQMPT KSSACSNNSE TSKGSGLSLS  180
RSENWIKADN KKEKEGESSH VASFTELLSG GINSFNNAHN GGSFRQNPNR RGGGGGGDAI  240
QSSDYFKTGL LGQLQFANSP KSVAAGSNHH HHHHNHNAEF QNFAFPAAGG NGGSSEYNLN  300
FTISSANNSP GFTAFNRGTL QSNSPPPSLL SHDIQRFNNP PADDGSTPNF FISGGGAAAP  360
VQNHNHFLSG FDAGLHLYYG DAHSNKGKLE KK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-2253107155Putative transcription factor PCF6
5zkt_B5e-2253107155Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.H01353.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012830233.10.0PREDICTED: transcription factor TCP2-like
TrEMBLA0A022RU180.0A0A022RU18_ERYGU; Uncharacterized protein
STRINGMigut.H01353.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24642252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.21e-46TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2