PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.H01308.1.p | ||||||||
Common Name | MIMGU_mgv1a023790mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | bHLH | ||||||||
Protein Properties | Length: 295aa MW: 33268.9 Da PI: 4.4988 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.8 | 2.2e-09 | 170 | 213 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + r+RR++i ++ +eL +l+P +K++ ae+L+ A +YIk Lq Migut.H01308.1.p 170 ASARQRRRKITEKTHELGKLVPGG-----QKMNTAEMLQSAYKYIKFLQ 213 5679******************86.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.522 | 163 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.16E-9 | 166 | 216 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 8.3E-12 | 167 | 219 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.9E-11 | 169 | 218 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.89E-12 | 170 | 229 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.3E-7 | 170 | 213 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MNTDTSFLAQ QETNLFPDQF FDYDSFDELF PDSSYSNEID HLFQPNDILY SQNYNNNNNN 60 NNNIPNQLPY NNNNNNLLTP LPDYTLHTPL VEFDPFQDLK RQKLFDTYNF PLHSDQLINP 120 SLLQHNFQPE FVLPEFVAAP PVYSGGSYAE TVTKPPPAAS GGGSLSAQSA SARQRRRKIT 180 EKTHELGKLV PGGQKMNTAE MLQSAYKYIK FLQAEVGILD SMGSYNHQGN GDQSELLHGL 240 ITSPLIQEKL YSAEKCLVPE KFVQALANDD DTTLESKPQL RKEINELRII DLSN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.H01308.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012830439.1 | 0.0 | PREDICTED: transcription factor bHLH52-like | ||||
TrEMBL | A0A022RW68 | 0.0 | A0A022RW68_ERYGU; Uncharacterized protein | ||||
STRING | Migut.H01308.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3856 | 22 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34820.1 | 2e-26 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.H01308.1.p |