PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.H01286.1.p
Common NameLOC105951294, MIMGU_mgv1a003478mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB_related
Protein Properties Length: 583aa    MW: 65547.7 Da    PI: 6.4666
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.H01286.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.17.5e-12110151446
                       S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       W ++E+ ll+++ +++G g+W+ +a+++g +++  qc++++ k
  Migut.H01286.1.p 110 WNADEEMLLLEGLEMYGLGNWNEVAEHVG-TKSKLQCIDHYDK 151
                       *****************************.**********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0250244.7E-15540582IPR016827Transcriptional adaptor 2
SMARTSM002915.7E-104691IPR000433Zinc finger, ZZ-type
PfamPF005693.0E-94884IPR000433Zinc finger, ZZ-type
CDDcd023351.99E-255098No hitNo description
PROSITE profilePS5013510.6895093IPR000433Zinc finger, ZZ-type
SuperFamilySSF578503.06E-1450113No hitNo description
PROSITE patternPS0135705279IPR000433Zinc finger, ZZ-type
PROSITE profilePS5129320.169105157IPR017884SANT domain
SuperFamilySSF466894.19E-12105155IPR009057Homeodomain-like
SMARTSM007175.4E-12106155IPR001005SANT/Myb domain
PfamPF002498.1E-12109151IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-7110154IPR009057Homeodomain-like
CDDcd001671.86E-5125153No hitNo description
SuperFamilySSF466891.79E-18499579IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0016573Biological Processhistone acetylation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MGRSRAASQA AVDDPGQSRS KRKRTTQNVD NTDSATPEFP GITDGKKALY HCNYCNKDIS  60
GKIRIKCVVC SDFDLCIECF SVGAEVYPHK SNHPYRVMDN LAFPLICPDW NADEEMLLLE  120
GLEMYGLGNW NEVAEHVGTK SKLQCIDHYD KVFMKSSCFP LPDMSHVMGK SREELLAMAK  180
EHGETKEGAT TFGEVDGKEQ SPFSARIKTE DQRKEGQSGR SSSISSEVDT IGGSGCGKMS  240
AGATKRMSSE VPSNDAPPDR VKVEEFHSDR SIGEKKPRTS GDEGVSMKEL SGYNSKRQEF  300
EVEYDNDAEQ LLADMEFKET DTETERELKL RVLHIYLKRL DERKRRKDFI LERNLLYPDP  360
FEKDLTSEEK ELCRRYRVFM RFHSKKEHDE LLKSVVEEQR ILKRIQNLQE ARAAGCRTSS  420
EAERYIEQKM KREVELEESA RRVKESSQAG PSGKYLQRMN NHHNNNTSPR VGNKSPSVLD  480
PGGMDSSSNT KQGGLAASDI LSDNWDVTGF LGADILSQAE KQLCGEMRIL PAHYLNMLQT  540
MSMGILNGNV TKKSDAHGLF NVDPGKVDKV YDMLIRKGIA QT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cw2_C2e-36501655120Transcriptional adapter 2
6cw3_E2e-36501655120Transcriptional adapter 2
6cw3_G2e-36501655120Transcriptional adapter 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1342347RKRRKD
Functional Description ? help Back to Top
Source Description
UniProtRequired for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.H01286.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012830156.10.0PREDICTED: transcriptional adapter ADA2
SwissprotQ75LL60.0TADA2_ORYSJ; Transcriptional adapter ADA2
TrEMBLA0A022RRP10.0A0A022RRP1_ERYGU; Transcriptional adapter
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24471215
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]