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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.H01112.1.p | ||||||||
Common Name | LOC105951111, MIMGU_mgv1a004878mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | Trihelix | ||||||||
Protein Properties | Length: 507aa MW: 57125.8 Da PI: 6.9145 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 91.7 | 7.7e-29 | 47 | 130 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+++e+laL+++r+em++++r+++lk+plW+evs+k+ e g++r++k+Ckek+en+ k++k++k+g++ r + +++++fdqle Migut.H01112.1.p 47 RWPREETLALLKIRSEMDTAFRDSNLKAPLWDEVSRKLGELGYNRNAKKCKEKFENIYKYHKRTKDGRSIR--HKGKNYKFFDQLE 130 8*******************************************************************997..45567******97 PP | |||||||
2 | trihelix | 97.7 | 9.9e-31 | 336 | 420 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k ev Li ++++++ +++++ k+plWee+s+ m++ gfers+k+Ckekwen+nk+yk++k+g+kkr +++s+tcpyf+ le Migut.H01112.1.p 336 RWPKAEVESLILLKTDLDMQYEENGPKGPLWEEISACMKKLGFERSAKRCKEKWENINKYYKRVKDGNKKR-PQDSKTCPYFSMLE 420 8*********************************************************************8.99********9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.329 | 40 | 104 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.4E-4 | 44 | 106 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 3.79E-24 | 46 | 111 | No hit | No description |
Pfam | PF13837 | 3.1E-18 | 46 | 130 | No hit | No description |
PROSITE profile | PS50090 | 6.876 | 329 | 393 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.17 | 333 | 395 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 1.2E-20 | 335 | 422 | No hit | No description |
CDD | cd12203 | 1.08E-22 | 336 | 400 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010192 | Biological Process | mucilage biosynthetic process | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 507 aa Download sequence Send to blast |
MLESSVFLEN SGGGASGGSA SDAAAVEFGN EGGGGEEEGS RNSGGKRWPR EETLALLKIR 60 SEMDTAFRDS NLKAPLWDEV SRKLGELGYN RNAKKCKEKF ENIYKYHKRT KDGRSIRHKG 120 KNYKFFDQLE LLDSQFSVPS TPLSQIPSYA TEMTQIATTL LPKPVTNLFQ DFTIQSELMS 180 DSTSTSSSSG KDSQGSSKKK KKKKKRKLED YLEGLVKDIL EKQGEMQNKF LEAVEKSQND 240 RMARTEAWLS QEMATIKRER QILAQERSTA SAKDAYVLDF LKKITHQDLP ITHISEILDP 300 LFNNKPCDNN EQENAIVNVN SIGEKNSSSV QTSSSRWPKA EVESLILLKT DLDMQYEENG 360 PKGPLWEEIS ACMKKLGFER SAKRCKEKWE NINKYYKRVK DGNKKRPQDS KTCPYFSMLE 420 SIYANKSKKA RNNDNNNNTD VSGGGCNLKP EQILMQMMGQ VQQQNQEQLI RGEYDDGDSD 480 RQEQEDDDVS GCDGYQVVAA NNNNMS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 198 | 206 | KKKKKKKRK |
2 | 200 | 206 | KKKKKRK |
3 | 200 | 207 | KKKKKRKL |
4 | 201 | 206 | KKKKRK |
5 | 202 | 207 | KKKRKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00243 | DAP | Transfer from AT1G76880 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.H01112.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012829956.1 | 0.0 | PREDICTED: trihelix transcription factor GT-2-like | ||||
Swissprot | Q39117 | 4e-61 | TGT2_ARATH; Trihelix transcription factor GT-2 | ||||
TrEMBL | A0A022RSJ5 | 0.0 | A0A022RSJ5_ERYGU; Uncharacterized protein | ||||
STRING | Migut.H01112.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9794 | 23 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 1e-110 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.H01112.1.p |
Entrez Gene | 105951111 |