PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.H00942.1.p
Common NameLOC105961638, MIMGU_mgv1a010134mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family NAC
Protein Properties Length: 322aa    MW: 36832.5 Da    PI: 6.4042
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.H00942.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.51.8e-55161421129
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lppGfrFhPtdeel+++yL +kv + +  + ++i +vd++kvePwdLp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke++
  Migut.H00942.1.p  16 LPPGFRFHPTDEELITHYLSPKVIDGNYIT-KAIGDVDLNKVEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIF 107
                       79********************99999666.78***************888999*************************************** PP

               NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrle 129
                       + ++ lvg+kktLvfykgrapkgekt+Wvmheyrle
  Migut.H00942.1.p 108 R-GKFLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLE 142
                       *.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-6512166IPR003441NAC domain
PROSITE profilePS5100560.19716166IPR003441NAC domain
PfamPF023651.5E-2917141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MEKFSGCNKN EEQIELPPGF RFHPTDEELI THYLSPKVID GNYITKAIGD VDLNKVEPWD  60
LPWKAKMGEK EWYFFCVRDR KYPTGLRTNR ATEAGYWKAT GKDKEIFRGK FLVGMKKTLV  120
FYKGRAPKGE KTNWVMHEYR LESKHSLQNL PKTANNEWVI CRIFKKSSDG KIVPISGLAS  180
SRNCGVDSEA ASYLPQLMDF SSDENHIRTT TCARASEGSH VTCFSNPMEE PRDITPFDDF  240
SSSSSSRDFR FSPFPFVLPH NSVFVENKSF PNVKRNGEGE FSQDMCSAMS SYNEVGYLPY  300
EDQEFPIIST AQVDLDCLWN Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-541317114170NO APICAL MERISTEM PROTEIN
1ut4_B7e-541317114170NO APICAL MERISTEM PROTEIN
1ut7_A7e-541317114170NO APICAL MERISTEM PROTEIN
1ut7_B7e-541317114170NO APICAL MERISTEM PROTEIN
3swm_A8e-541317117173NAC domain-containing protein 19
3swm_B8e-541317117173NAC domain-containing protein 19
3swm_C8e-541317117173NAC domain-containing protein 19
3swm_D8e-541317117173NAC domain-containing protein 19
3swp_A8e-541317117173NAC domain-containing protein 19
3swp_B8e-541317117173NAC domain-containing protein 19
3swp_C8e-541317117173NAC domain-containing protein 19
3swp_D8e-541317117173NAC domain-containing protein 19
4dul_A7e-541317114170NAC domain-containing protein 19
4dul_B7e-541317114170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.H00942.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012841327.10.0PREDICTED: NAC domain-containing protein 100
SwissprotQ9FLJ21e-116NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A022R0270.0A0A022R027_ERYGU; Uncharacterized protein
STRINGMigut.H00942.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15224279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-118NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]